Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01440 ATGACTGCCAACGGAGGGAGTTGTCTGAAGACTCATGATTTCCTGCAGCCACTGGAACGGCTAGAGACGAAGGGGAGTGCGAAGGAAGAAGCGACAGATGAAATATCGTGGGTGGTTGAGAAGGCAGGACCTTCAGTTGAGCATCTCTTACCTGGAGGAATTGGGACTTACAGCATTAACCACATTTCATATGTTAGTAATAACAATAACAGTAATAATCAAAGGCTTCCGAAAGCAGAGACGTCCCTTTTCGTGCGTCCAGCAACTAGTACGGACAGGAACGATGAGAACTCCAACTGCAGTTCATATACTACTTCCAGCGGTTTCACTTTGTGGGAAGACTCATCGGCGGGGAAGAGGGACAAAACAGGAAAGGAGAATAATTCGGGCGACAAACCCTCTCTTGGAGAGTGTGCGGCGACAAAACTAGGACAGTGGACATCAACGGAGCGGACCTCACAGTCGTTTTGTACCAATCATCACGATAGCTTCAGCTCTCGCTCTTCGTCTCAGACAACTGGGCAGAAGAGCCAGAGTTTTATTGAAATGATGAAGTCCGCAAGGGACAGTGCCCAGGATGAAGCCCCGGAGAACGAAGAAACATTTTTTCTCAAGAAAGAACCTTCCAATAACCAAAGAGAACTGACGGTGAAAGTGGATGGTAAGAGTACCGATCAAAAGCCAAACACACCAAGATCAAAACACTCTGCAACAGAACAGCGGAGAAGGAGCAAAATTAATGACAGATTCCAAATGCTAAGAGAGCTTATTCCACACAGTGACCAAAAGAGGGACAAAGCATCTTTTTTATTAGAGGTCATTGAGTATATTCATTTTTTACAAGAGAAGGTGCACAAGTATGAAGGTTCATTTCAAGGGTGGAGTAACGAGCAAGAAAAATTGATGCCATGGCAGAGAAATAATGACAAGCCAGCAGAAAACTTTCAACATCGTGGCACTGATAATGGGTCAAGTCCATCTCCAACACTGCTTTTTGCTTCAAAGAATGAGGAGAAAAATATTAGCATCTCCCCAACAATTCCTGGGAGTACCCAGAATGTAGAATCTGGCTTGAGTACACCAACTACCTCCAAGACAATGGACCATCAGGCTGGAATAATGAACAAGGCTTTTCCAATTCCTATTTCTTCACAGCTAAATTTCTTCTCTCCAGCACAAATGGGCGGTCCAGGTGGCTTAGTGTCTCAGCCCCCACATAGACCGGGTTCTGATGCCGAGAACAAATATCAACCTTCAGTGGAGTGTCAGACCATGGCGGCTACCAGTGAAAAGCTGAAAGAGAAAGAGCTCGCTATTGAAGGTGGTGCAATTAGCATATCAAGTGTGTACTCAAAAGGGTTGCTGCATACGCTTACACATGCACTGCAAAGTTCAGGGGTGGATTTGTCACAGGCTAGCATCTCAGTGCAAATTGAACTTGGTAAACAGGCAAACATCAGACCAACTATACCAGTGTCAGTGTGTGGTGCTAAGGATGGTGAAGTACCTTCTAACAACCAAAAGGTGATGCGCTCTAGAGTTGCTAGCTCTGGGAAGTCTGACCAAGCAATTAAGAAGCTAAAGATCTGCAGAAATTAA 1599 0.4509 MTANGGSCLKTHDFLQPLERLETKGSAKEEATDEISWVVEKAGPSVEHLLPGGIGTYSINHISYVSNNNNSNNQRLPKAETSLFVRPATSTDRNDENSNCSSYTTSSGFTLWEDSSAGKRDKTGKENNSGDKPSLGECAATKLGQWTSTERTSQSFCTNHHDSFSSRSSSQTTGQKSQSFIEMMKSARDSAQDEAPENEETFFLKKEPSNNQRELTVKVDGKSTDQKPNTPRSKHSATEQRRRSKINDRFQMLRELIPHSDQKRDKASFLLEVIEYIHFLQEKVHKYEGSFQGWSNEQEKLMPWQRNNDKPAENFQHRGTDNGSSPSPTLLFASKNEEKNISISPTIPGSTQNVESGLSTPTTSKTMDHQAGIMNKAFPIPISSQLNFFSPAQMGGPGGLVSQPPHRPGSDAENKYQPSVECQTMAATSEKLKEKELAIEGGAISISSVYSKGLLHTLTHALQSSGVDLSQASISVQIELGKQANIRPTIPVSVCGAKDGEVPSNNQKVMRSRVASSGKSDQAIKKLKICRN 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01440 532 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 9 529 IPR044295 GO:0003700|GO:0006351|GO:0046983
Phco8g01440 532 Gene3D - 228 302 IPR036638 GO:0046983
Phco8g01440 532 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 230 280 IPR011598 GO:0046983
Phco8g01440 532 MobiDBLite consensus disorder prediction 154 185 - -
Phco8g01440 532 MobiDBLite consensus disorder prediction 307 365 - -
Phco8g01440 532 FunFam BHLH domain class transcription factor 228 300 - -
Phco8g01440 532 MobiDBLite consensus disorder prediction 154 245 - -
Phco8g01440 532 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 228 301 IPR036638 GO:0046983
Phco8g01440 532 CDD bHLH_AtBIM_like 229 305 - -
Phco8g01440 532 Pfam Helix-loop-helix DNA-binding domain 232 281 IPR011598 GO:0046983
Phco8g01440 532 MobiDBLite consensus disorder prediction 111 137 - -
Phco8g01440 532 MobiDBLite consensus disorder prediction 317 365 - -
Phco8g01440 532 SMART finulus 236 286 IPR011598 GO:0046983
Phco8g01440 532 MobiDBLite consensus disorder prediction 187 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01440 Phco-Chr8 14888684 14894884 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco8g01440 HLH 4.5e-15 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01440 8 14888684 14894884 Phco8g01440 8 14888684 14894884 ECH