Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01430 ATGGGGAGGGGAAGAGTGGAGTTGAAGAGGATCGAGAACAAGATCAATAGGCAAGTCTCGTTCTCAAAGAGAAGGTCTGGTTTGCTCAAGAAAGCCCGCGAGATCTCTGTGCTTTGCGATGCTGATGTCGCTCTCCTCGTCTTCTCCCCTAAAGGCAAACTTTTAGACTTCTCCAACCAACCTTCTGTGGAAAGAATTCTTGAACGGTATGAGAGGCATTCGTATGCAGAGAGGCAAAACGGTGCAGGTGATCAAGCACCAAATGAAAACTGGGTTATAGAACAAGAAAGACTGAAGGATAGGGTGGAGGTACTGCAGCGACGTCAAAGGAATTTTATGGGAGAAGAGCTTGATAGCTTAAATCTTAGAGAACTTCAGCGTTTAGAACAACAACTTCATTCTGCCCTCAAGCACATTAGATCACGAAAGAACCAAACCATGCATGAATCTATTTCAGCGCTTCAGAAAAAGATTAAAGAAAAAGAGAAGGCACTGGGCCCTGAAGAGCAGGAGAGGTTGCAAAACATCAGGGATGTGACTTCTGTCATTGTAACTAAGCCATTGCAGTCCCTGAATATTGGAGGCTCCCCAGAAGCCAAATGTAGTGAAGGAACTCCAACGTCAACTCAACCTAAAACCATATTTCCTCCTTGGATGATAACTCGTCCTACAGATGAATAG 681 0.4464 MGRGRVELKRIENKINRQVSFSKRRSGLLKKAREISVLCDADVALLVFSPKGKLLDFSNQPSVERILERYERHSYAERQNGAGDQAPNENWVIEQERLKDRVEVLQRRQRNFMGEELDSLNLRELQRLEQQLHSALKHIRSRKNQTMHESISALQKKIKEKEKALGPEEQERLQNIRDVTSVIVTKPLQSLNIGGSPEAKCSEGTPTSTQPKTIFPPWMITRPTDE 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01430 226 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 168 - -
Phco8g01430 226 Pfam K-box region 86 163 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phco8g01430 226 MobiDBLite consensus disorder prediction 194 215 - -
Phco8g01430 226 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Phco8g01430 226 Coils Coil 88 108 - -
Phco8g01430 226 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Phco8g01430 226 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Phco8g01430 226 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Phco8g01430 226 ProSiteProfiles K-box domain profile. 88 182 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phco8g01430 226 MobiDBLite consensus disorder prediction 194 226 - -
Phco8g01430 226 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phco8g01430 226 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phco8g01430 226 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Phco8g01430 226 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phco8g01430 226 Coils Coil 125 164 - -
Phco8g01430 226 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Phco8g01430 226 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01430 Phco-Chr8 14815593 14821307 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Phco8g01430 K-box 1.5e-22 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01430 8 14815593 14821307 Phco7g02429 7 42421284 42430041 PCT