Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01429 ATGGGAAGAGGGAGGGTTGAACTCAAGAGGATAGAGAACAAAATCAACAGGCAAGTCACATTTGCCAAGAGAAGAAATGGCTTGCTCAAGAAGGCCTATGAGCTCTCAGTCCTTTGTGATGCTGAGGTTGCCCTCATCATCTTCTCCAACCGTGGCAAGCTCTATGAGTTCAGCAGCACCTCAAGTATGGTGAAAACACTGGAGAAGTACCAGAAGTACAGCTACAGTACACTGGAGACCGCCCGACCAATTAACGACATTCAGAACTACCAGGAATATTTGAGATTAAAAGCAAGGGTAGAAATCTTGCAACGTTCACAAAGGAACCTACTTGGGGAAGATCTTGCCCAAATGAATACAAATGATCTTGAGCAGCTAGAGAATCAACTAGAGACAGCACTGAAGAACATTAGGTCAACAAAGACTCAATTCATGCTTGACCAGCTTGCTGATCTTCACCACCGGGAAACGTTACTTGTTGAAACTAATAATGTGTTAAGGAGTAAGTTGGAAGAAACTAATAACTCACAAGCTCCAGTGAGTCTAGCTTTGGAAGCTGGAGGGTCTAACATCCATTACACAAACTTTCCTCCTCAATCAGAGGGGTTCTTCCAACCAGTGGGAGTGAATCCCAACTTGCAAATTGGATTCAACCAGATTGGTCCTGATGATGCAAACGTTGGAGCTTCATCCTTGAGTATGCATGGATTCGCCTCTGGGTGGATGCTTTGA 732 0.444 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFSSTSSMVKTLEKYQKYSYSTLETARPINDIQNYQEYLRLKARVEILQRSQRNLLGEDLAQMNTNDLEQLENQLETALKNIRSTKTQFMLDQLADLHHRETLLVETNNVLRSKLEETNNSQAPVSLALEAGGSNIHYTNFPPQSEGFFQPVGVNPNLQIGFNQIGPDDANVGASSLSMHGFASGWML 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01429 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phco8g01429 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 164 - -
Phco8g01429 243 Pfam K-box region 89 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phco8g01429 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Phco8g01429 243 Coils Coil 116 143 - -
Phco8g01429 243 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Phco8g01429 243 FunFam MADS-box transcription factor 1 13 88 - -
Phco8g01429 243 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Phco8g01429 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phco8g01429 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phco8g01429 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Phco8g01429 243 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Phco8g01429 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Phco8g01429 243 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phco8g01429 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01429 Phco-Chr8 14805893 14810247 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Phco8g01429 K-box 1.1e-25 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01429 8 14805893 14810247 Phco7g02429 7 42421284 42430041 ECH
Phco3g02967 3 56021032 56026714 Phco8g01429 8 14805893 14810247 ECH
Phco8g01429 8 14805893 14810247 Phco8g01429 8 14805893 14810247 ECH