Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01428 ATGGAATCTTGGAGCTTTGTCCCTGAAGAAAAGGAGTGTGTCTCCAATGAGGCACTATCCCCTCCCAACACTCTCGGGAGGACCATGAATTCTTTCTTGGGCTGGGAACTCAAAACCCCATGTGGTTTCTCCAACGAGATGTTGGGTTTGGGTCAGCACACTATTGAGAATCAAGGTTTTGAGGAATTGGGTTTTCCAGAAATGTTGGGGAAACACTTGTCCGATGATCTAATTGCCAGTGTTTCAAGCAGAAAGGTGGATGCTGGAAGACAAAACCAACACCAACACAGTGACAGAATCACTGGAACTGTTGTGGATGCCCCAAGTGGCTTTTCTCAAAGAGGGGACTCAAATTCCAAGCTTTCAAACTCAAATTCCCTCATTGATTTGAAGCTGGGTCGGTTTGCTGACCATGGAGATGCCATTGATCCGGGGTTTTCCAAAGTTTTGTCTTCTTCTGAGTCATCAACGCCTCCTAAGAGAGCGAGAGTTTCGGGGGTTCACTCTCAGACTGCATATTGCCAAGTCTATGGCTGTAATAAGGATCTCAGCTCCTGTAAAGATTACCACAAGAGGCACAAGGTGTGTGAGGTTCACTCCAAGACTGCCACCGTTATAGTCAATGGTATTGAGCAAAGGTTTTGCCAGCAATGTAGTAGGTTTCATTTGCTAGCTGAATTTGATGATGGTAAGCGAAGCTGCCGTAAACGCCTTGCAGGTCATAATGAGCGTAGAAGAAAGCCACAAATGGGGATTCACCCCGGAAAGTCTGGGAGGTTGCTTCAGCCATGTGGGGATAGCAGATTCCAGGGAACTCTGCTAACATCATCCTTTATCCGCCCAGAGATGCTTCCTAGTGGGGTCATGTGTTCTGAGAAATATGGTATGAGTGGCTTCTGGCGACATATCAAAGCAGAACACGGAGCTGGTTTTAGGCATCTTTCTTCAATGCCTGTATCCAATGGACATCCTCAGTCAAGGTCGTTATTTCCATCATATAACGGAAAACAATTTCCTTTTCTTCAAGAAAATTGTGCAACATCCACCACAGGAAGCATCTTCTGTGAGAGCAATAGCCACTATCCACCTACCCTCAGGGCACAAGATTCTGGGTTAAGGCCACTATTCCAGGACACCTTAGGAAATGAGGACTTCAATGTTTTTGATACAGCATCAACTGTTCAAGGATTATCGGAGATTTCAGATTCTTGTTGTGCTCTCTCTCTTCTGTCATCTCAATCCCAGAACTCTTCTAGCCAATCATCAGGAATTCCCTTGGTTCACTCCTTGGTTATTCCAAGCAGTCATGGCCATCACTATAGCATGAGTCAGGTCTCTGAAAAGATAGGAATAAGCTCACAGACTTCTTCAAGCCGAGTGTCAGATAGTTTTCCTTCAGAACTAAATCATGCAGACGGAAGTCATCTCAGTCCTGTGTTAATATCAGACCATAATGATATTGTAAACTTTGATATGGCAGATGGTATCTTTCATGGTTCAGAATTCATGAATGTGAAGGATAGACTTTCCTGCGAAGATGGTGCAACTATCGACTTGCTACAATTGTCATCACAGCTTCAGCGAGTTGAGCATGAGAGGCAATCCTTGCAGGTGAAGCAGGAGAATGATTCTTCTTGCACTCTGCGGATTACATAA 1656 0.4475 MESWSFVPEEKECVSNEALSPPNTLGRTMNSFLGWELKTPCGFSNEMLGLGQHTIENQGFEELGFPEMLGKHLSDDLIASVSSRKVDAGRQNQHQHSDRITGTVVDAPSGFSQRGDSNSKLSNSNSLIDLKLGRFADHGDAIDPGFSKVLSSSESSTPPKRARVSGVHSQTAYCQVYGCNKDLSSCKDYHKRHKVCEVHSKTATVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQMGIHPGKSGRLLQPCGDSRFQGTLLTSSFIRPEMLPSGVMCSEKYGMSGFWRHIKAEHGAGFRHLSSMPVSNGHPQSRSLFPSYNGKQFPFLQENCATSTTGSIFCESNSHYPPTLRAQDSGLRPLFQDTLGNEDFNVFDTASTVQGLSEISDSCCALSLLSSQSQNSSSQSSGIPLVHSLVIPSSHGHHYSMSQVSEKIGISSQTSSSRVSDSFPSELNHADGSHLSPVLISDHNDIVNFDMADGIFHGSEFMNVKDRLSCEDGATIDLLQLSSQLQRVEHERQSLQVKQENDSSCTLRIT 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01428 551 MobiDBLite consensus disorder prediction 447 468 - -
Phco8g01428 551 FunFam Squamosa promoter-binding-like protein 14 165 235 - -
Phco8g01428 551 Coils Coil 519 539 - -
Phco8g01428 551 Gene3D - 164 235 IPR036893 GO:0003677|GO:0005634
Phco8g01428 551 Pfam SBP domain 174 247 IPR004333 GO:0003677
Phco8g01428 551 SUPERFAMILY SBT domain 172 251 IPR036893 GO:0003677|GO:0005634
Phco8g01428 551 ProSiteProfiles Zinc finger SBP-type profile. 171 248 IPR004333 GO:0003677
Phco8g01428 551 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 99 537 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01428 Phco-Chr8 14759246 14762649 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Phco8g01428 SBP 4.5e-31 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01428 8 14759246 14762649 Phco8g01428 8 14759246 14762649 ECH