Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01405 ATGGCGTCTTCGTCGTCCTTGGCAAAGCGATGCCATTACGAAGTACTCGATCTACCCCAAGACTGCGCCCCCGAAGAGATCCGCTCCGCCTACCGCCGTCTCGCTCTTCAGCGCCACCCGGACAAGCTCATAAAATCGGGTCTCTCCCAAGAGGAAGCTACCGCGCAGTTCCAGGAACTCCAACACGCATACGAAGTTCTCTCCGACCCCAAGGAACGCGCTTGGTACGATTCTCACCGTTCCCAAATCCTCTTTTCCGACCCCAATTCCCTCTCCAAATCACTCGTCCCCGACCTCTTCTCTTTCTTCTCAAACACCGTCTATTCCGGCTACTCCGACACCGGAAAGGGCTTCTATAAAGTTTATTCTGATGTTTTCGATAAAATCCTCGCTAACGAGATCAATTTCGCTCGGAAAATGGGGCTCGGAGTTGATGCGATTCGACAGGCTCCTGTGATGGGGAACTTGGATAGCCCCTACGCGCAGGTCACTGCGTTTTATGGATATTGGTTAGGGTTTTGTACTGTGATGGATTTTTGTTGGGTGGATGAGTATGATGTTATGGCAGGGCCGAACCGGAAGTCGAGGCGGCTTATGGAGGAGGAGAATAATAAGGTGAGGAGGAAGGCGAGAAGAGAGTATAACGATACTGTGAGGAGGTTGGGGGATTTTGTGAAGAAGAGGGATAAGAGGGTGATTGACATGAAGGTGAAGAGGAACGCGGAGATGGAGAGGAAGAAGGAGGAGGAGAGGGAGAGGAAGAAAAGGTTGGAGCAGGAGAGGAAGGAGAGGGCCATGGCGTATGAGGAGCCTGATTGGGCTAAGGTGGAGGTGGAGGAGGTAGTGGAGGAATGGGTTGAAGAGGGGGATGAGGAGAAGAAGAATGATAAGGAGTTTTATTGTGTGCTGTGTGGGAAGAAGTTTAAGAGTGAGAAGCAGTGGAAGAACCATGAGCAGTCCAAGAAGCATAAGGAGAGGGTTGCGGAGTTCAGGGATTCCATTGGTGATGAGGAGGATTTGGAAGAAGGAAAGGAGGGATTGGGAAGTGAGGAAGATGGGGTTGTGGTGAATGGTGATGGTGGTTATGGGGTTGGGGTGAATGGTGATGGTGGTAATGGGGTTGGAGTGAATGGTGTTGGTGGTTATGGGGTTGGTGATTTGGAGACGAGGATTCGGGATGGTCTTAATGTTGAAGAGGGGGTAATTAGAAACGGGGTTGAACTGGGTGATGAAGATGGCGGCGCTGGTGGTGATGATGCTGACGACGACGACGAGTTTTCCGAAGCTTCGCATGTGAAAGAGGGGCAAGATGCCAATGGGTCGGTTAATTTTGATGATAATGGCAATCAAGATGATGATAACGATGAAAATGGTGTTCTTGAAGCAATGGTGGCTGGCCACAAGAACAGAAAGCCACGAGCTTCAACGCACAAATCCAAGGCTTCAATAGTTCCATCTCAAATTGAAACTGAGAATGAAGTTGGCCCTATGGAATATAACAACCGGAAGAGCACAAGAAAGAAACGTGGAGCTAAGAAAGAGAAGGGTAGGAAAAATTGGGAAGAATCTCAGGAGACTGCTGCCAGTTGCAATGATGAGAATATAAACGGTAATGGAAATGACAATTCTCATGCAGAGGAGTCTTGTTCCCAACATTTTGTGGAAAATGAGGATAATAGTATGGGTAACGAGCAGCAGGTTAGTAGAGGTAATAAGATTTCAAACCAAACCGCTGATAAAAAGGGTGCTGGCAAGGACACAAAAATCAAAGCCAAAATTTCATCCAAAGGAAGAAAAGCAAAGGTGACATCAAAAAACATTGGTAATACTTGTGATGCGTGTGGAGAGGAGTTTGAATCAAGAAATAAATTACATATACATCTAGGCGATTCTGGGCATGCGACAATACTAAGAGGTCGATAA 1923 0.4774 MASSSSLAKRCHYEVLDLPQDCAPEEIRSAYRRLALQRHPDKLIKSGLSQEEATAQFQELQHAYEVLSDPKERAWYDSHRSQILFSDPNSLSKSLVPDLFSFFSNTVYSGYSDTGKGFYKVYSDVFDKILANEINFARKMGLGVDAIRQAPVMGNLDSPYAQVTAFYGYWLGFCTVMDFCWVDEYDVMAGPNRKSRRLMEEENNKVRRKARREYNDTVRRLGDFVKKRDKRVIDMKVKRNAEMERKKEEERERKKRLEQERKERAMAYEEPDWAKVEVEEVVEEWVEEGDEEKKNDKEFYCVLCGKKFKSEKQWKNHEQSKKHKERVAEFRDSIGDEEDLEEGKEGLGSEEDGVVVNGDGGYGVGVNGDGGNGVGVNGVGGYGVGDLETRIRDGLNVEEGVIRNGVELGDEDGGAGGDDADDDDEFSEASHVKEGQDANGSVNFDDNGNQDDDNDENGVLEAMVAGHKNRKPRASTHKSKASIVPSQIETENEVGPMEYNNRKSTRKKRGAKKEKGRKNWEESQETAASCNDENINGNGNDNSHAEESCSQHFVENEDNSMGNEQQVSRGNKISNQTADKKGAGKDTKIKAKISSKGRKAKVTSKNIGNTCDACGEEFESRNKLHIHLGDSGHATILRGR 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01405 640 SUPERFAMILY beta-beta-alpha zinc fingers 288 339 IPR036236 -
Phco8g01405 640 ProSiteProfiles dnaJ domain profile. 11 80 IPR001623 -
Phco8g01405 640 Gene3D DnaJ domain 2 92 IPR036869 -
Phco8g01405 640 Pfam Zinc-finger double-stranded RNA-binding 299 324 IPR022755 -
Phco8g01405 640 MobiDBLite consensus disorder prediction 579 593 - -
Phco8g01405 640 SMART dnaj_3 10 72 IPR001623 -
Phco8g01405 640 Pfam DnaJ domain 12 77 IPR001623 -
Phco8g01405 640 PRINTS DnaJ domain signature 31 46 IPR001623 -
Phco8g01405 640 PRINTS DnaJ domain signature 13 31 IPR001623 -
Phco8g01405 640 PRINTS DnaJ domain signature 52 72 IPR001623 -
Phco8g01405 640 MobiDBLite consensus disorder prediction 523 547 - -
Phco8g01405 640 CDD DnaJ 11 69 IPR001623 -
Phco8g01405 640 Gene3D Classic Zinc Finger 287 349 - -
Phco8g01405 640 ProSitePatterns Zinc finger C2H2 type domain signature. 301 323 IPR013087 -
Phco8g01405 640 ProSiteProfiles Zinc finger C2H2 type domain profile. 299 328 IPR013087 -
Phco8g01405 640 SMART c2h2final6 299 323 IPR013087 -
Phco8g01405 640 SMART c2h2final6 609 633 IPR013087 -
Phco8g01405 640 MobiDBLite consensus disorder prediction 402 602 - -
Phco8g01405 640 Coils Coil 233 267 - -
Phco8g01405 640 ProSitePatterns Zinc finger C2H2 type domain signature. 611 633 IPR013087 -
Phco8g01405 640 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 5 636 IPR044648 -
Phco8g01405 640 MobiDBLite consensus disorder prediction 314 361 - -
Phco8g01405 640 MobiDBLite consensus disorder prediction 479 499 - -
Phco8g01405 640 ProSitePatterns Nt-dnaJ domain signature. 57 76 IPR018253 -
Phco8g01405 640 SUPERFAMILY Chaperone J-domain 8 81 IPR036869 -
Phco8g01405 640 MobiDBLite consensus disorder prediction 314 333 - -
Phco8g01405 640 MobiDBLite consensus disorder prediction 554 578 - -
Phco8g01405 640 SMART ZnF_U1_5 296 330 IPR003604 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01405 Phco-Chr8 14546218 14549204 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco8g01405 DnaJ 1.3e-20 CL0392