Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco8g01393 | ATGGAAGGAGATCGAATTCAAGAATCGAAACACGCGTGCAAGTTCTGCGGCAAGTGCTTCCCTTGTGGCAGATCCTTGGGGGGTCACATGAGGTCTCATATCACCAACTTGTCGTCGGAGGAAAAAGAAAAGCTTCCCTCGCGGAAGCTTTTTTCATCGTCTCTCAACAATGATGGAGACAAAGATTCTGAAGCTGCTGCAACGAACGCTGCCTATGGCCTCAGAGAGAACCCCAAGAAGACTTGGAGAATCTCAGATCATTCAAGCGAAGACGCTTTGGTGTTTGACAAGTTCTGCAAAGAGTGTGGCAAAGCGTTCCACTCTTGGAAGGCCTTGTTTGGGCACATGAAATGCCACTCCGAGAAAGAGAGAGTTTCCAACAGCTTGGAAGATCAAGATTCGTGGACTAATGCTAAGGTGGTCATGGATAGTCAGTCTGATAACGAAGCAACTGCTCCAAATAAGAGAAGAAGGTCCAAGAGACGAACAAGGTACACGATTGCTCCTGCTGCAGCAACTTCTTCGGTTGTGTCTTTTGCCAATCCTTCCTCTTCTCTCTCTGAGGTTGAGCAAGAGCAAGAAGAGGTTGCTATGAGCTTGATGATGCTTAGTAGGGATGTGAGTCCTTGGAGTGGTCCTCATTCCGTTGCCGAGTCCTCTGACAACAATTCTGCTTATTTCGAAGCTCGATCTTCAGTTCGAACTAATCTGGTTACCAAATTTGATGGCAACAGTAACTTCACGCCTAACATAGCAAGAATGATCAAGCAAAGTGATAATAAGTGGGAGGTTGGGAATTCGGAAAATCCCAACTCAATCCGAGGAAAGAGTTCACAACGTTTGACTACTACTGCTGCTACTGTGGAGATTGCTGAAAATGGATTTAGAGTGAACAAAAGTGGAGTTTCCAGTATAGGATATGAAAAGGTCAACAAGTCTGAGCTTCAGTATGTGTCTGCATTGGGGGATTCAGAAGGGGAACATGGGAGGAGCAGAGTCAATGGATCAGAATCGATTTTATCAAAGTCCACTACTACTGGCAACAAGTACTATTCGATCAAGACAAAGTTTCTCAATAAGAACTGGGTGGACAAGGCTTCAGAAGCTGAATCTAGCAAGAACTCTCATAAGAGAGGCAAGTTTGAGTGTACCACTTGCAATAAAACCTTCCACTCATACCAAGCTCTTGGCGGGCATAGAGCAAGCCACAAGAAGATCAAGGGGTGTTTTGCTTCGAGAAATGAGAGCAGCGAGAACAGCATTGAAACTGATCTCCCTCCTGACCCAATAACAACCGAAAACAAGCTCATGTGTAACACTGACCGTGAGTATCTGGGGGAAAATCAACATGGTGCTGGTTTTCATGATGAGGTGGAAACAGTTACTGAGTCCAAGAAGAGCAAGGGGCACGAGTGCCCAATTTGCCTCAAAGTTTTTCCATCAGGGCAAGCCTTGGGTGGCCATAAGAGATCTCATATGACTGGTGGGTCTGAGAGTAGAAACTTTGAAACAGTTGTACTTCAGGAACCAGTGGCAAAAATTAGGGACTTCCTTGATCTTAATCTTCCTGCTGCTACTGAGGAAGAAAGCAATAGTCATGCTGACTCTAACAGACCCTGGTGGGTAGTAGAAGACAATCACAAACAGGAGGCACTTGTAGGCCTGATCTTATAG | 1674 | 0.4546 | MEGDRIQESKHACKFCGKCFPCGRSLGGHMRSHITNLSSEEKEKLPSRKLFSSSLNNDGDKDSEAAATNAAYGLRENPKKTWRISDHSSEDALVFDKFCKECGKAFHSWKALFGHMKCHSEKERVSNSLEDQDSWTNAKVVMDSQSDNEATAPNKRRRSKRRTRYTIAPAAATSSVVSFANPSSSLSEVEQEQEEVAMSLMMLSRDVSPWSGPHSVAESSDNNSAYFEARSSVRTNLVTKFDGNSNFTPNIARMIKQSDNKWEVGNSENPNSIRGKSSQRLTTTAATVEIAENGFRVNKSGVSSIGYEKVNKSELQYVSALGDSEGEHGRSRVNGSESILSKSTTTGNKYYSIKTKFLNKNWVDKASEAESSKNSHKRGKFECTTCNKTFHSYQALGGHRASHKKIKGCFASRNESSENSIETDLPPDPITTENKLMCNTDREYLGENQHGAGFHDEVETVTESKKSKGHECPICLKVFPSGQALGGHKRSHMTGGSESRNFETVVLQEPVAKIRDFLDLNLPAATEEESNSHADSNRPWWVVEDNHKQEALVGLIL | 557 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco8g01393 | 557 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 381 | 408 | IPR013087 | - | |
| Phco8g01393 | 557 | Gene3D | Classic Zinc Finger | 378 | 492 | - | - | |
| Phco8g01393 | 557 | MobiDBLite | consensus disorder prediction | 49 | 63 | - | - | |
| Phco8g01393 | 557 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 99 | 119 | IPR013087 | - | |
| Phco8g01393 | 557 | MobiDBLite | consensus disorder prediction | 38 | 64 | - | - | |
| Phco8g01393 | 557 | Pfam | C2H2-type zinc finger | 470 | 493 | - | - | |
| Phco8g01393 | 557 | Pfam | C2H2-type zinc finger | 99 | 121 | - | - | |
| Phco8g01393 | 557 | Pfam | C2H2-type zinc finger | 381 | 405 | - | - | |
| Phco8g01393 | 557 | Pfam | C2H2-type zinc finger | 11 | 33 | - | - | |
| Phco8g01393 | 557 | SUPERFAMILY | beta-beta-alpha zinc fingers | 7 | 35 | IPR036236 | - | |
| Phco8g01393 | 557 | PANTHER | C2H2-LIKE ZINC FINGER PROTEIN | 1 | 541 | - | - | |
| Phco8g01393 | 557 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 97 | 124 | IPR013087 | - | |
| Phco8g01393 | 557 | MobiDBLite | consensus disorder prediction | 141 | 162 | - | - | |
| Phco8g01393 | 557 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 11 | 33 | IPR013087 | - | |
| Phco8g01393 | 557 | SMART | c2h2final6 | 97 | 119 | IPR013087 | - | |
| Phco8g01393 | 557 | SMART | c2h2final6 | 381 | 403 | IPR013087 | - | |
| Phco8g01393 | 557 | SMART | c2h2final6 | 11 | 33 | IPR013087 | - | |
| Phco8g01393 | 557 | SMART | c2h2final6 | 470 | 492 | IPR013087 | - | |
| Phco8g01393 | 557 | SUPERFAMILY | beta-beta-alpha zinc fingers | 98 | 403 | IPR036236 | - | |
| Phco8g01393 | 557 | Gene3D | Classic Zinc Finger | 2 | 70 | - | - | |
| Phco8g01393 | 557 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 383 | 403 | IPR013087 | - | |
| Phco8g01393 | 557 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 13 | 33 | IPR013087 | - | |
| Phco8g01393 | 557 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 472 | 492 | IPR013087 | - | |
| Phco8g01393 | 557 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 470 | 492 | IPR013087 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco8g01393 | Phco-Chr8 | 14431533 | 14433206 | Dispersed/Wgd |
Transcription factors information