Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01366 ATGGATGCTGAAACTGAGACCGAGGAACTTATTAATTTGAACAATAAAGCCAGTAACTGTGGTGGGAATAATAGTAAGAGTGGCGATGGCTTTATTGACAGAAGCAAAGTGAGGATTTTGTTGTGTGACAACGATTCCAAGAGTTCTGAAGAGGTTTTTACTCTTCTTATGGGGTGTTCTTATCAGGTAACTTCAGTAAGATCAGCTAGGCAACTAATTGATGCACTGAATGCGGAGAGGCAATATATAGACATGATACTAGTTGAAGTTGACCTTCCGGTAAAGAAAGGAATAAAGTTGTTGAAGTACATAGCAAGGGATAAAGAATTATGCCGAATCCCTGTTATAATGATGTCTGCACAAGATGAGGTATCCATTGTTGTAAAGTGCTTGAGGCTTGGAGCAGCAGATTACCTAGTGAAGCCTTTACGCACAAATGAACTATTAAATTTGTGGACACACATGTGGAGAAGGAGACGCATGCTTGGCCTTGTGGAGAAGAACATCTTGAATTATGAGTTTGAACTGGTAGCATCAGATCCAAGTGATGCCAATACAAACAGTACCACCTTGTTCTCTGATGACACAGATGACAAGTCCAGAAGAGGCAGTAATCCAGAGACAGTAGTATCAATCCAACAAGAACAAGAGGTTAGTATTGCCGCCACCACCAGTATTGTGGTGGAGCTTCCCAGTGCTCTTTTATCAGAATATCAGCCTGATGTGCCTGGAATAAGTGATCGCCGAACAGGACATTTTTCAACTGGTCCAAAGAAAAGTGAACTGAAGATTGGAGAGTCATCAGCCTTTTTCACCTATGTCAAAGCAACAGCACTGAAGAGCAACATTGAAGAGAGTGCTCATGTTGACAATACTACTACAGAAGTTAGGGTGGAACATGTGAATCAAGCATGTGGTGAACAGGAGGGTAATGACCTTAGAGCACATGAAAATGGAGAAATGTTTGAAAATCATTCACAAGATGACTTACCCAGCAGCAACAGTATCCCTGATTCTTTCTCTATTGAGAGATCTTGTACTCCACCTGCTTCGATGGAAGTTTCTCAGCAAAAGCATTACAGGGAAGAACATTCTCGAGGAGTAGTGCATCCAAGAAATGGAAGTCATGATTCCGATCCTGCTCAACATGTTTATCCATATTATATTTCAGGAGTTGTTAATCATGTTATGATGCCATCATCAGCACAAATGTTTCAAAAGAATATCCAGGACCTCCAAAGTCATTCTAGTTCATCTGTGATTGCACAGTACAATCATCTTCCCCAGTGTCCTCCTCATGCAAGTGGGATGACACCCTTCCCATATTATCCAATGAACATTTGCTTACGACCTGGTCAGATTTCTACAACTCATTCTTGGCCATCATTAGGAAGTTCAAGTTCATGTGAAGTAAAATTAAGTAAGGTTGATAGGAGAGAAGCAGCATTGATGAAGTTTAGACAGAAAAGGAAAGAACGATGTTTTGATAAGAAAATTAGGTACGTCAACAGAAAACGGCTAGCAGAAAGGCGGCCTCGTGTGAGGGGACAGTTTGTCCGAAAGTTGAATGGTGTTAATGTGGATCTTAATGGACAACCTACTTCCACTGATTATGATGAAGAAGATGATGAAGAGGAGGAAGACAACCATGTAGCAAGAGATTTCTCTCCTGAGGATGCTTGA 1683 0.41 MDAETETEELINLNNKASNCGGNNSKSGDGFIDRSKVRILLCDNDSKSSEEVFTLLMGCSYQVTSVRSARQLIDALNAERQYIDMILVEVDLPVKKGIKLLKYIARDKELCRIPVIMMSAQDEVSIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLVEKNILNYEFELVASDPSDANTNSTTLFSDDTDDKSRRGSNPETVVSIQQEQEVSIAATTSIVVELPSALLSEYQPDVPGISDRRTGHFSTGPKKSELKIGESSAFFTYVKATALKSNIEESAHVDNTTTEVRVEHVNQACGEQEGNDLRAHENGEMFENHSQDDLPSSNSIPDSFSIERSCTPPASMEVSQQKHYREEHSRGVVHPRNGSHDSDPAQHVYPYYISGVVNHVMMPSSAQMFQKNIQDLQSHSSSSVIAQYNHLPQCPPHASGMTPFPYYPMNICLRPGQISTTHSWPSLGSSSSCEVKLSKVDRREAALMKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKLNGVNVDLNGQPTSTDYDEEDDEEEEDNHVARDFSPEDA 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01366 560 ProSiteProfiles Response regulatory domain profile. 38 156 IPR001789 GO:0000160
Phco8g01366 560 SUPERFAMILY CheY-like 35 163 IPR011006 -
Phco8g01366 560 MobiDBLite consensus disorder prediction 524 560 - -
Phco8g01366 560 MobiDBLite consensus disorder prediction 185 208 - -
Phco8g01366 560 MobiDBLite consensus disorder prediction 535 549 - -
Phco8g01366 560 Gene3D - 37 231 - -
Phco8g01366 560 SMART REC_2 37 152 IPR001789 GO:0000160
Phco8g01366 560 Pfam CCT motif 479 521 IPR010402 GO:0005515
Phco8g01366 560 Pfam Response regulator receiver domain 39 150 IPR001789 GO:0000160
Phco8g01366 560 ProSiteProfiles CCT domain profile. 479 521 IPR010402 GO:0005515
Phco8g01366 560 PANTHER TWO-COMPONENT RESPONSE REGULATOR 37 245 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01366 Phco-Chr8 14185400 14190470 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Phco8g01366 Response_reg 7.6e-18 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01366 8 14185400 14190470 Phco8g01366 8 14185400 14190470 ECH