Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01351 ATGGGAAGGGTTAAATTGAAGATAAAGAAACTAGAGAGCATAAGCAATCGACATGTGACTTATTCAAAGCGTAAAAGTGGAATTTTAAAGAAAGCAAAGGAATTATCAATACTATGCGATATAGACATTCTCCTTCTCATGTTCTCTCCTACAGGAAAGCCTACATTACTACAAGGAGAGCGCAGTAATATTGAGGAGGTTGTTGCAAAATTTGGTCAACTTAGCCCACAAGAAAGGGCCAAAAGGAAAATGGAAAGCCTTGAAGCACTAAAGAAAACCTTCAAGAAATTGGATCACGACGTAAAAATACAGGATTTCTTAGGTTCAAGCAGCCAAACAATGGAGGAATTATCTCATCAAGTGAGGGTTTTACAAGCTCAACTCACAGAAGTACATCAGAGACTGAGCTATTGGAATAATCTAGAGAAGATCAACAATTTAGAGCATCTTAGGCAAATGGAAGACTCGTTACGAGAATCAATCAATCGAGTGGGCCTGCAGAAGGAAAATTTAGGAAAGCACCAATTCATTTCCCTTGAATGTGCTAACCAGTTACAGGAAGGGATGACATTACCCTTGATGATGGCAAGTCTACAAGAATCTCAACCACTGTCTTGGCTTTTGAATAATGATAATCATCAATTGTTGTTACCAAATGAACCAAAATTTCTACCATTTAGTGATAATACCAATAGAGACGCTGAGTGTTCCACTGACATTTCAATTCCAAGCTATTCAAGTTATATTGGGAGCAACAAACTTGAAGTTGGTAGCTCTCCCCAAGTGACTACTTTGGGTCAAGGAGGTGGTGCAATGAACGAGTTAAATGGAACAACATACTTAAATGTACAACGTTGTGACCAATTTACATTCCCTCCTCCACAAGATATTGAGGAAGCGAAACATTTACCAACGTTGAACAATAAATCAAACACGGTGGATTACCAAGTTAACAACTTTGATCTTTCTGGTTCACTATTCGAAAATGGACATCAATTTTGGAATTCAGCTACGGGGTCTTGTGGTATTGCCATGTATAATGAGAACGGCTACCACAGGGTAAGCAATTCTTTTATGTCTCAATGA 1086 0.3831 MGRVKLKIKKLESISNRHVTYSKRKSGILKKAKELSILCDIDILLLMFSPTGKPTLLQGERSNIEEVVAKFGQLSPQERAKRKMESLEALKKTFKKLDHDVKIQDFLGSSSQTMEELSHQVRVLQAQLTEVHQRLSYWNNLEKINNLEHLRQMEDSLRESINRVGLQKENLGKHQFISLECANQLQEGMTLPLMMASLQESQPLSWLLNNDNHQLLLPNEPKFLPFSDNTNRDAECSTDISIPSYSSYIGSNKLEVGSSPQVTTLGQGGGAMNELNGTTYLNVQRCDQFTFPPPQDIEEAKHLPTLNNKSNTVDYQVNNFDLSGSLFENGHQFWNSATGSCGIAMYNENGYHRVSNSFMSQ 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01351 361 Coils Coil 77 97 - -
Phco8g01351 361 FunFam Agamous-like MADS-box protein AGL30 14 96 - -
Phco8g01351 361 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 196 - -
Phco8g01351 361 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phco8g01351 361 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Phco8g01351 361 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phco8g01351 361 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 55 IPR002100 GO:0003677|GO:0046983
Phco8g01351 361 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phco8g01351 361 Coils Coil 114 134 - -
Phco8g01351 361 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Phco8g01351 361 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Phco8g01351 361 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Phco8g01351 361 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01351 Phco-Chr8 14065702 14069724 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Phco8g01351 SRF-TF 2.3e-19 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01351 8 14065702 14069724 Phco8g01351 8 14065702 14069724 ECH