Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01347 ATGCACGAAAATAGAGATCCTGCAATTAGGCTCTTCGGCCAGAAGATCCCCTTCCCTGAAGATGTTGACATAGAAGAAGAAGAAGAAGATGATGATGAGGGTTGTGATGGAAGAGACCAAGAGATAGAAGAGGATAAGGATGCTGGAGTTGAAAATGTTACCGATGAAGAGCTAGAAGCTGATCCTGCTCCAAGTGCAGGAGAGACTAAAGATTCAGATACCCCTGAGGCTATTGTGAACCCCGAAACACCCTCCATAGAAGAAGAAACAGCAAAATCAAAAGCTGACAAATCAGAGAAGGAGCAAGGCGATGCAGCCAACTCACAAGAGAAAACTCTGAAGAAACCAGATAAAGTGCTACCATGCCCCCGCTGCAAAAGTATGGACACTAAGTTTTGTTACTACAACAACTACAATGTCAACCAGCCACGTTATTTCTGCAAAGCTTGTCAAAGATACTGGACTGCAGGTGGCACCATGAGGAATGTTCCTGTTGGGGCAGGGCGGCGAAAGAACAAGAACTCTACCTCGCATTATCGCCACATCAGTATCTCTGATGCCCTTCAAGCAGCCAGAATTGATTCTCATAATGGAACTCATCTTCCAACTTTGAAAGGCAGTGGTAGAGTTCTCAGCTTTGGATTAGATGCAAATGCACCAATTTGTGATTCCATGGCATCTGTCCTCAATCTTGGAGAGAAAAAGGTTCCTAATGGCACAAAAAACGGGTTTCATCATGGCTTTGAGGATCAAGGACTCCCTATTCCTCGCAAAAGTGGGGAAAATGGTGATGACTCTTCGACTACATCTTCCATTACAGTTTCAAATTCCATGGGAGAAAGTAGCAAAAGCACCTTCCAACAACAACCGGTGCTCCAACCTCATGGTTTCATTCCTCAACTTCCGTGTGTTCCTTGGCCCTTTACATGGAATTCTCCCGTTCCCCCACCTGCTTTGTGTCCTTCCGGATTTCCCTTACCATTCTATCCTCCTGCTACATTCTGGAACTGTGGCATGCCAGGGAATTGGAATGTTCCATGGTTTTCTTCACTTTCATCTGCTTCAAACCCAAACTCTCCAAGCTCCGCTCCAAACTCTCCGACTTTGGGGAAGCACTCGCGGGACGGAGACATGATTAAGCAAGACTCTTTGCACAAAGAAGAAGATTCAAAGCCAAGAAACGGGGGTGTTTTGATTCCCAAAACCTTGAGAATTGATGATCCAAATGAAGCTGCAAAGAGTTCTATATGGGCAACTCTAGGAATTAAGAATGAGTCATTGAATGGTGGAGGTATGTTTAAGGCCTTCCAATCAAAGAAGGACGAAAAGAATCGTGTTGAAGCCTCTCCAGTGTTGATGGCTAACCCTGCAGCTTTATCTAGATCCCTCAATTTTCATGAGAACTCGTGA 1410 0.4489 MHENRDPAIRLFGQKIPFPEDVDIEEEEEDDDEGCDGRDQEIEEDKDAGVENVTDEELEADPAPSAGETKDSDTPEAIVNPETPSIEEETAKSKADKSEKEQGDAANSQEKTLKKPDKVLPCPRCKSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSTSHYRHISISDALQAARIDSHNGTHLPTLKGSGRVLSFGLDANAPICDSMASVLNLGEKKVPNGTKNGFHHGFEDQGLPIPRKSGENGDDSSTTSSITVSNSMGESSKSTFQQQPVLQPHGFIPQLPCVPWPFTWNSPVPPPALCPSGFPLPFYPPATFWNCGMPGNWNVPWFSSLSSASNPNSPSSAPNSPTLGKHSRDGDMIKQDSLHKEEDSKPRNGGVLIPKTLRIDDPNEAAKSSIWATLGIKNESLNGGGMFKAFQSKKDEKNRVEASPVLMANPAALSRSLNFHENS 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01347 469 ProSiteProfiles Zinc finger Dof-type profile. 120 174 IPR003851 GO:0003677|GO:0006355
Phco8g01347 469 MobiDBLite consensus disorder prediction 87 119 - -
Phco8g01347 469 MobiDBLite consensus disorder prediction 383 402 - -
Phco8g01347 469 MobiDBLite consensus disorder prediction 21 40 - -
Phco8g01347 469 MobiDBLite consensus disorder prediction 261 289 - -
Phco8g01347 469 ProSitePatterns Zinc finger Dof-type signature. 122 158 IPR003851 GO:0003677|GO:0006355
Phco8g01347 469 MobiDBLite consensus disorder prediction 353 369 - -
Phco8g01347 469 Pfam Dof domain, zinc finger 117 174 IPR003851 GO:0003677|GO:0006355
Phco8g01347 469 MobiDBLite consensus disorder prediction 1 119 - -
Phco8g01347 469 PANTHER CYCLIC DOF FACTOR 2 1 469 IPR045174 GO:0003700|GO:0006355
Phco8g01347 469 MobiDBLite consensus disorder prediction 48 62 - -
Phco8g01347 469 MobiDBLite consensus disorder prediction 353 376 - -
Phco8g01347 469 MobiDBLite consensus disorder prediction 240 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01347 Phco-Chr8 14042849 14045541 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Phco8g01347 zf-Dof 3e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01347 8 14042849 14045541 Phco7g02236 7 39494555 39497088 ECH
Phco8g01347 8 14042849 14045541 Phco8g01347 8 14042849 14045541 ECH
Phco4g01976 4 39223836 39226551 Phco8g01347 8 14042849 14045541 ECH
Phco4g01618 4 15799446 15802420 Phco8g01347 8 14042849 14045541 PCT