Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01335 ATGGGGAGGTCACCTTGCTGTGACAAAATTGGAATTAAGAAAGGACCTTGGACTCCAGAGGAGGATATCATGTTGGTGTCTTACATTCAAGAACATGGACCAGGAAATTGGAGATCAGTTCCCACCAACACAGGTTTGATAAGATGCAGTAAGAGCTGCAGGCTTAGATGGACTAATTATCTACGACCTGGTATCAAACGAGGTAATTTCACTGAGCATGAGGAGAAGATCATAGTCCACCTTCAAGCCCTTTTGGGCAACAGATGGGCTGCTATAGCTTCATACCTTCCAGAAAGAACAGACAATGACATAAAAAATTATTGGAATACCCATTTGAAGAAGAAGCTGAAACTAAGTGACCAAAGTGGGAATGAAGAGGGTGCGGAACAAGAGGGACATTCTTCTTGTTCACATCCAAAGGGTCAGTGGGAGAGAAGATTACAAACAGATATCCAAACGGCCAAGCAAGCCTTGTGTGATGCTTTGTCCCTTCACACCACACCAGCAACACATGCTGTGCCTGAGACAATGCCTTCTTCAACTTCTCATCAACCCTACAGCCATGCCTCATCTTCATATGCATCAAGCTATGAAAACATTTCCCGGTTGATGGAAAACTGGATGAAAACTCCAAGCTCAAACGAAACAAATTCTCTGGGGGATTTTTCCTTCAATAACATGGTGGATAATACACCAAGATGCAGTTCTAGTGAGGGAGCACATAGCACCACTAATACCACGTGTGCACAAGATCATGTTTTTGACTTGTTCACCTTAAGCTCCTCCACAAACTATGGTTCTCCATCTCAGACTCAAGTGCCTCTTACGATGATAGAGAATTGGCTTTTTGAGGATGGGTCTTCTCAGTCTCATGGAGATCTGATGAGCATGTCGCTGGAAGAAAGTACTTTAGGTTTGTTTTAG 924 0.434 MGRSPCCDKIGIKKGPWTPEEDIMLVSYIQEHGPGNWRSVPTNTGLIRCSKSCRLRWTNYLRPGIKRGNFTEHEEKIIVHLQALLGNRWAAIASYLPERTDNDIKNYWNTHLKKKLKLSDQSGNEEGAEQEGHSSCSHPKGQWERRLQTDIQTAKQALCDALSLHTTPATHAVPETMPSSTSHQPYSHASSSYASSYENISRLMENWMKTPSSNETNSLGDFSFNNMVDNTPRCSSSEGAHSTTNTTCAQDHVFDLFTLSSSTNYGSPSQTQVPLTMIENWLFEDGSSQSHGDLMSMSLEESTLGLF 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01335 307 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 235 - -
Phco8g01335 307 SMART sant 13 63 IPR001005 -
Phco8g01335 307 SMART sant 66 114 IPR001005 -
Phco8g01335 307 CDD SANT 69 112 IPR001005 -
Phco8g01335 307 MobiDBLite consensus disorder prediction 118 144 - -
Phco8g01335 307 CDD SANT 16 61 IPR001005 -
Phco8g01335 307 FunFam MYB-related transcription factor 13 66 - -
Phco8g01335 307 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Phco8g01335 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Phco8g01335 307 Gene3D - 13 66 - -
Phco8g01335 307 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Phco8g01335 307 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Phco8g01335 307 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Phco8g01335 307 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Phco8g01335 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Phco8g01335 307 Gene3D - 68 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01335 Phco-Chr8 13923573 13924862 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco8g01335 Myb_DNA-binding 4.8e-14 CL0123