Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01330 ATGGAGGGAGGCGACGATCTCCACCACCATCACCACCACCACCGTCAAAACTTCCCATTCCAGCTCCTGGAGAAGAAAGAAGACCAAGAACCGCCCTCATGCTCCACGTCCTCCCCCCACCCTTCCCTAGCAATCTCCGCAGAACCCAGCACGTCCAATTCCACCCGATCCAACCAGCTCGCTGTGGTGTCCGAGCCCGCAAACAGCAAAAAGCCGCCGCCAAAACGCACGTCGACCAAGGACCGACACACGAAGGTGGACGGTCGTGGCCGCCGCATCCGAATGCCCGCCCTCTGCGCCGCCCGCGTCTTCCAACTCACGCGCGAACTTGGTCACAAGTCTGATGGCGAAACTATCGAGTGGCTCCTCCAGCAGGCCGAACCCGCCGTCATAGCCGCCACCGGGACCGGCACCATCCCCGCCAACTTCACCTCTCTCAACATCTCCCTCCGCAGCTCCGGATCCTCCATGTCCGTTCCCTCCCAGCTCCGGTCCTCCTACTTCAACCCCAACTTCTCCCTCCAACAACGGCGCACCTTGTTCCCCGGTATCGCCTTATCGTCCGACACCAACCCCACCAACACCTCCACACTCCTAAATTTCCAATCCAACAACCTGAACAACTCCATGCTCCAGGCGAAGCCCGAAGCCCCCTCCTCCACCTTGGATTTGTCTGACACAAGCGCGGAGGAATCAACCCTAGGCCGAAAAAGAAGACCAACGGAACAAGACATATCTTCCTCCTCGCAGCACCAAATGGGAAGTTATCTCCTCCAGTCGAGTGCGGGCACGATTCCTGCGAGCCACGCCGCCAACATATGGATGGTGGCAAATTCAAACTCCAATCAAGTCATGAGTGGCGATCCCATATGGACCTTCCCTCCGGTTAACAACAGCGCCTTGTATCGAGGCACCATGTCAAGTGGGTTGCATTTCATGAACTTTCCCACGCCCATGGCACTGTTGCCGAGTCAGCAACTAGGGTCTTCTGGGATTGGTGCTGTTGGGGGAAGCAGTAATAATAATAATAACAACAATAATAATATGAATGAAGGGCATTTGAGTATGCTTGCGGGGCTTAGTGCTTATCGTCCTGTTATCGGTGTTTCTGAATCTCAGGCGAGCGGCTCGCAGTCGCATCGTGGAGGTGCTGCCGATGATCGCCATGAAACCAACAGTCACCACTCCTAG 1191 0.5634 MEGGDDLHHHHHHHRQNFPFQLLEKKEDQEPPSCSTSSPHPSLAISAEPSTSNSTRSNQLAVVSEPANSKKPPPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSSYFNPNFSLQQRRTLFPGIALSSDTNPTNTSTLLNFQSNNLNNSMLQAKPEAPSSTLDLSDTSAEESTLGRKRRPTEQDISSSSQHQMGSYLLQSSAGTIPASHAANIWMVANSNSNQVMSGDPIWTFPPVNNSALYRGTMSSGLHFMNFPTPMALLPSQQLGSSGIGAVGGSSNNNNNNNNNMNEGHLSMLAGLSAYRPVIGVSESQASGSQSHRGGAADDRHETNSHHS 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01330 396 MobiDBLite consensus disorder prediction 211 229 - -
Phco8g01330 396 MobiDBLite consensus disorder prediction 17 31 - -
Phco8g01330 396 Coils Coil 394 396 - -
Phco8g01330 396 MobiDBLite consensus disorder prediction 230 244 - -
Phco8g01330 396 MobiDBLite consensus disorder prediction 32 65 - -
Phco8g01330 396 Pfam TCP family transcription factor 77 245 IPR017887 -
Phco8g01330 396 MobiDBLite consensus disorder prediction 382 396 - -
Phco8g01330 396 MobiDBLite consensus disorder prediction 1 92 - -
Phco8g01330 396 ProSiteProfiles TCP domain profile. 79 133 IPR017887 -
Phco8g01330 396 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 29 352 IPR005333 GO:0003700
Phco8g01330 396 MobiDBLite consensus disorder prediction 370 396 - -
Phco8g01330 396 MobiDBLite consensus disorder prediction 211 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01330 Phco-Chr8 13859125 13860315 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Phco8g01330 TCP 3e-40 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01330 8 13859125 13860315 Phco7g02258 7 39825096 39826262 ECH
Phco8g01330 8 13859125 13860315 Phco8g01330 8 13859125 13860315 ECH
Phco4g01656 4 16495242 16496510 Phco8g01330 8 13859125 13860315 PCT