Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01325 ATGGGAAATTGCTGTGGAACTCGGTGCAAGATTGATGCCAATTTGAATCCCCAGCCATATTCTGATGTTACGGAAGTTGACAATAGAAGCAATTTGTTAGTTCATTCAAATCCAAACGGGTATGGATTCATTGATGAAGGTAAACCTGAGATTCTCCCTACTCCAAGATCTGAAGGGGACATACTTTCATCCCCACATTTAAAGCCCTTCACATTATATGATCTTAAGAAGGCCACAAGAAATTTTCAGCCTCATAATCTAATTGGAGAAGGAGGATTTGGAAATGTTTATAAGGGGAGGATTAATGGTAATAAATCCCTCGGGGTTACGATTTCTGATGTAGCTGTGAAGAAGCTTAGGCCTGAAGGCTTTCAAGGGCACAAGGAGTGGCTGTCCGAAGTCAATTATCTTGGCCAACTTCACCATCAGAATCTTGTCAAACTTATTGGATACTGCCTAGAAGGAGATAACCGACTTCTGGTGTATGAGTACTTGCCCAACGGAAGCTTGGAAGATCATATATTTCGCAAGGGCGCACAACCACTTCCCTGGGCAACAAGAATCAAGATTGCTACGGGTGCTGCTCGAGGTCTCTCTTTCCTACATGACTCTAAGCAACAAATTATCTACCGTGATTTCAAGGCTTCTAATATTTTGTTAGATTCGGAATTTAATGCAAAACTCTCAGACTTTGGATTGGCCAAAGCAGGGCCCACTGGTGATCATTCTTATGTTTCCACACAAGTTCTCGGCACTCACGGCTATGCTGCTCCTGAATATATTGCTACAGGTCGGTTGACATCAAGGTGTGATGTCTATAGCTTTGGGGTTGTGCTATTGGAACTACTATCAGGGCGCCATGCTATTGATAACACAAAATCTGGAGTGGAACATAATCTGGTGGAATGGGCAAGACCCTATTTGGGTGATAGGAGGAAGTTGTTCCGGATTATGGATACCAAGTTAGAAGGGCAATACCCACAGAGGGCAGCTTATACAGTTGCAATAATTGCTTTACAGTGTATTTCTGATGCCAAGACTAGACCACAAATGTCAGAGATTTTATCTGCCTTGGAACACCTGCCAGCCATTAGACATTCAGCAAGCCCATGTAGAGAAGAGAAACCCATACAGAGTCCTGTCAGAGAGGCTCTAAGTCCTGCAGTGAATTTCCCTTTGAGACATAATGATCCTCAAAAAAATAGAGAGTTGTGA 1215 0.4288 MGNCCGTRCKIDANLNPQPYSDVTEVDNRSNLLVHSNPNGYGFIDEGKPEILPTPRSEGDILSSPHLKPFTLYDLKKATRNFQPHNLIGEGGFGNVYKGRINGNKSLGVTISDVAVKKLRPEGFQGHKEWLSEVNYLGQLHHQNLVKLIGYCLEGDNRLLVYEYLPNGSLEDHIFRKGAQPLPWATRIKIATGAARGLSFLHDSKQQIIYRDFKASNILLDSEFNAKLSDFGLAKAGPTGDHSYVSTQVLGTHGYAAPEYIATGRLTSRCDVYSFGVVLLELLSGRHAIDNTKSGVEHNLVEWARPYLGDRRKLFRIMDTKLEGQYPQRAAYTVAIIALQCISDAKTRPQMSEILSALEHLPAIRHSASPCREEKPIQSPVREALSPAVNFPLRHNDPQKNREL 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01325 404 CDD STKc_IRAK 88 361 - -
Phco8g01325 404 PANTHER OS01G0588500 PROTEIN-RELATED 59 361 - -
Phco8g01325 404 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Phco8g01325 404 FunFam Serine/threonine-protein kinase BIK1 52 164 - -
Phco8g01325 404 Gene3D Phosphorylase Kinase; domain 1 54 164 - -
Phco8g01325 404 ProSitePatterns Protein kinases ATP-binding region signature. 88 118 IPR017441 GO:0005524
Phco8g01325 404 Gene3D Transferase(Phosphotransferase) domain 1 165 375 - -
Phco8g01325 404 FunFam Serine/threonine-protein kinase PBS1 165 375 - -
Phco8g01325 404 SUPERFAMILY Protein kinase-like (PK-like) 60 359 IPR011009 -
Phco8g01325 404 Pfam Protein tyrosine and serine/threonine kinase 86 358 IPR001245 GO:0004672|GO:0006468
Phco8g01325 404 ProSiteProfiles Protein kinase domain profile. 82 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01325 Phco-Chr8 13810584 13815954 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Phco8g01325 PK_Tyr_Ser-Thr 6.8e-46 CL0016