Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01319 ATGGAGCTTGCTTCGGAGAGATCTGGTGACGGAGGAAGTGGACTCAAGGAAGAAAAGAGCAGTGATGACTATACTGTTGGTGATGCTGAAGATGCTCCTCGTAAACAAGAGATTATTGTCCAGGAAGCACCCGCAGCTAATACGGAAAGATCCAAACAGGAAGCTGGACCTAGCACATCCGCAGACAAAAAGGAAGAGCTTGAGAGCACGAAAGCTGAAATGGGTGCGGTGAGAGAAGAAAATCAGCGGTTAAAGAGGTCTTTGAACAAAATAATGAATGAGTATCGGACACTAGAAATGCAATTTCAAGACGTACTCAAGCAAGGGACAAAAAGGAATAAAGGAAATGATAACCAAGAAGACACATTAGAGGAATCGGATCTGGTTTCTCTCAGCCTAGGAAGAGTTCCTAACAATCAAAGAAACGATGAGAAAATAAAAGTTTGTAAAAAATTGAAGGATGATGAAGGGTTTAACGAAGACTTGACTCTTGGACTGTGCAAATCAAAGTCAGGAAGCACAACTGAAGCTTTGCCTAATCCAAGCCCAGAAAACAGTTCTGAAGTTCCAAAGGAAGAAGCTGGGGAAACTTGGCCTCCGAGTAAGGAGATACAGAAGACAATCAGGGACACGGAGGATGAAGTTGCTCAGCAAAACCCTATGAAGAAGCCACGAGTTTGCGTTAGAGCAAGATGCGACACTCCAACAATGAATGATGGATGCCAGTGGAGGAAATATGGACAGAAGATCGCAAAGGGAAATCCTTGCCCTCGAGCTTACTATCGTTGCACCATTGCACCATCATGCCCTGTGAGAAAACAGGTGCAAAGATGCGTTGATGACATGTCCATTCTAATTACCACGTATGAAGGGACCCACAACCACACACTTCCACCTTCAGCTACTGCCATGGCATCCACAACTTCCGCAGCAGCATCCATGCTTCTTTCTGGTTCATCAACCTCTCACTCTGCCTCAACACCTTCAACAACAGCAGCCACTTCTGCTACGAATCTCCACGGCCTCAACTTCTATCTATCAGATGGTTCAAAACCAAGGCAATTATACCTGTCCAACCCTGCACTGTCATCTTCACCTTCACATCCAACCATCACTCTCGACCTCACTTCTCACCCATCTTCTTCCTCCTCATCCCCCTTCGTTAGATTCTCTTCAAACTACAACCAACCCAGATACCCCTCTTCCTCAAGCCTAAGCTTCAGTAGTTCCTCAGAAATCAATGCATTGTCGTGGAGCAACGGCTTCCTTAACAATAATAATACTATTCAACCACCATATAATACCAGGAACATACTTGGTAATGTAAACTTTGGGAGACAACAAGTGGAAAATATATACCAATCCTACATGCAAAAGAACAACAGCAATATTCCAAGCGTTCCTCAAGGTGGTGTACCAGCTGATACTATATCTGCAGCAACGAAAGTGATCACAGCAGACCCTACTTTTCAATCAGCTTTGGCAGCAGCGCTCACTTCGTTTATTGGTGGTGGTGTTCGAGGAAATCAAGGTGGTAATAGTGTTGGAGAAAGTCCAAGTTTGGGTCAGAAAAAGAAGTGGGGTGAGGTGTTTCCCGCGTCTAATAATTCCTCTTCTACCTTGCCTTGTTCAACTTCGAAAGTCAATGGTTGTGCAACGAGCTTCTTGAACAAAACGCCCGCGAATAATACACAGACGAAAAGTTTGATGTTTCTACCGCCGTCGTCTTTGCCGTTTTCCACCCCCAAAAGTGCATCTGCATCTGCGTCTCCTGCTGATAATAGCGACACCACCAATTAA 1800 0.4478 MELASERSGDGGSGLKEEKSSDDYTVGDAEDAPRKQEIIVQEAPAANTERSKQEAGPSTSADKKEELESTKAEMGAVREENQRLKRSLNKIMNEYRTLEMQFQDVLKQGTKRNKGNDNQEDTLEESDLVSLSLGRVPNNQRNDEKIKVCKKLKDDEGFNEDLTLGLCKSKSGSTTEALPNPSPENSSEVPKEEAGETWPPSKEIQKTIRDTEDEVAQQNPMKKPRVCVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTIAPSCPVRKQVQRCVDDMSILITTYEGTHNHTLPPSATAMASTTSAAASMLLSGSSTSHSASTPSTTAATSATNLHGLNFYLSDGSKPRQLYLSNPALSSSPSHPTITLDLTSHPSSSSSSPFVRFSSNYNQPRYPSSSSLSFSSSSEINALSWSNGFLNNNNTIQPPYNTRNILGNVNFGRQQVENIYQSYMQKNNSNIPSVPQGGVPADTISAATKVITADPTFQSALAAALTSFIGGGVRGNQGGNSVGESPSLGQKKKWGEVFPASNNSSSTLPCSTSKVNGCATSFLNKTPANNTQTKSLMFLPPSSLPFSTPKSASASASPADNSDTTN 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01319 599 MobiDBLite consensus disorder prediction 1 84 - -
Phco8g01319 599 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 51 514 IPR044810 GO:0003700
Phco8g01319 599 MobiDBLite consensus disorder prediction 367 388 - -
Phco8g01319 599 MobiDBLite consensus disorder prediction 56 84 - -
Phco8g01319 599 MobiDBLite consensus disorder prediction 169 187 - -
Phco8g01319 599 Pfam WRKY DNA -binding domain 238 295 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco8g01319 599 MobiDBLite consensus disorder prediction 106 127 - -
Phco8g01319 599 MobiDBLite consensus disorder prediction 189 203 - -
Phco8g01319 599 FunFam probable WRKY transcription factor 31 222 299 - -
Phco8g01319 599 Coils Coil 60 108 - -
Phco8g01319 599 MobiDBLite consensus disorder prediction 564 599 - -
Phco8g01319 599 Gene3D WRKY domain 222 299 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco8g01319 599 SMART WRKY_cls 237 297 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco8g01319 599 MobiDBLite consensus disorder prediction 11 37 - -
Phco8g01319 599 MobiDBLite consensus disorder prediction 169 203 - -
Phco8g01319 599 ProSiteProfiles WRKY domain profile. 232 298 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco8g01319 599 SUPERFAMILY WRKY DNA-binding domain 230 298 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01319 Phco-Chr8 13740167 13743852 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Phco8g01319 WRKY 1.9e-23 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01319 8 13740167 13743852 Phco7g02279 7 40160177 40163607 ECH
Phco3g02803 3 54444396 54447487 Phco8g01319 8 13740167 13743852 ECH
Phco8g01319 8 13740167 13743852 Phco8g01319 8 13740167 13743852 ECH