Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01309 ATGGCGGCTGGAAGACCCTTTTCCGACATCACTACCTTCCTTCGCAACCAAACCGCTCTTCCCACTTCCCAACCTCTCGATTCTCTCTTCCTCTCTTCTTCCACTGCTCCTTTTCTTGGTTCGAGATCCATGATGAGTTTCGAAGGAGAAGGAGGGAAGGGGTGTAATGGTTCCTTCTTCCGCGCGTTTGATATAGACGAGAATGGAGATGAGTGCATGGACGAGTACTTTCATCAGCCCGAGAAGAAGCGCCGTCTCTCTGCCAACCAGGTTCAGTTCCTCGAGAAGAGCTTCGAGGAAGAGAACAAGCTTGAACCCGAGAGAAAAACCAAGTTAGCCAAAGATCTTGGTCTGCAGCCACGACAAGTCGCTATTTGGTTCCAGAACCGTCGTGCTCGGTGGAGGACCAAACAGCTCGAGAAGGATTACGAGATTCTGCATGACAGCTTTGAGAGTCTCAAGGCCAACTACGAAAACCTCCTCAAGGAGAAAGACAAGTTGAAATCTGAGGTGGCGCACCTGAGTGAGAAGGTGCTTGCAAGAGAGAAAGAAGAGGAGCAGTTGAAGCAGGGTGAAAGGGGAACGAAGGGTTTGCAGGAACAGGATCAGGAACCACCCCAAAGGCCTATACTTGATTCAGTTTCGGAGGGTGAAGGATCCAAAGTGTCTTGCGTTGTTGGGGGTTGCAAACAGGAAGATATCAGTTCAGCCAGGAGTGACATTTTGGACTCCGATAGCCCGCATTACACGGATGGAGTTCACTCAGCAGTGCTAGAGCATGGCGATTCTTCTTATGTGTTTGAGCCTGATCAATCAGACATGTCACAAGATGAAGAAGACAACCTCAGCAAGAGTCTGTACCCTTCGTACCTCTTTCCCAAACTTGAAGATGCCGATTACTCCGACCCCACGGAAAGTTCTTGTAATTTTGGATTCTCGGAGGAAGATCATGCCCTTTGGACCTGGGAGTACTAA 975 0.4944 MAAGRPFSDITTFLRNQTALPTSQPLDSLFLSSSTAPFLGSRSMMSFEGEGGKGCNGSFFRAFDIDENGDECMDEYFHQPEKKRRLSANQVQFLEKSFEEENKLEPERKTKLAKDLGLQPRQVAIWFQNRRARWRTKQLEKDYEILHDSFESLKANYENLLKEKDKLKSEVAHLSEKVLAREKEEEQLKQGERGTKGLQEQDQEPPQRPILDSVSEGEGSKVSCVVGGCKQEDISSARSDILDSDSPHYTDGVHSAVLEHGDSSYVFEPDQSDMSQDEEDNLSKSLYPSYLFPKLEDADYSDPTESSCNFGFSEEDHALWTWEY 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01309 324 Coils Coil 143 201 - -
Phco8g01309 324 SMART HOX_1 80 141 IPR001356 GO:0003677
Phco8g01309 324 ProSitePatterns 'Homeobox' domain signature. 112 135 IPR017970 GO:0000981|GO:0006355
Phco8g01309 324 PRINTS Lambda-repressor HTH signature 108 117 IPR000047 GO:0003677
Phco8g01309 324 PRINTS Lambda-repressor HTH signature 117 133 IPR000047 GO:0003677
Phco8g01309 324 MobiDBLite consensus disorder prediction 182 199 - -
Phco8g01309 324 Pfam Homeobox associated leucine zipper 137 178 IPR003106 GO:0006355|GO:0043565
Phco8g01309 324 SUPERFAMILY Homeodomain-like 69 139 IPR009057 -
Phco8g01309 324 MobiDBLite consensus disorder prediction 182 216 - -
Phco8g01309 324 Pfam Homeodomain 82 135 IPR001356 GO:0003677
Phco8g01309 324 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 69 236 IPR045224 GO:0003700
Phco8g01309 324 CDD homeodomain 82 138 IPR001356 GO:0003677
Phco8g01309 324 Gene3D - 76 151 - -
Phco8g01309 324 ProSiteProfiles 'Homeobox' domain profile. 77 137 IPR001356 GO:0003677
Phco8g01309 324 FunFam homeobox-leucine zipper protein ATHB-6-like 85 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01309 Phco-Chr8 13642022 13643277 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Phco8g01309 Homeodomain 1.1e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01309 8 13642022 13643277 Phco7g02284 7 40205808 40207489 ECH
Phco8g01309 8 13642022 13643277 Phco8g01309 8 13642022 13643277 ECH