Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01296 ATGGGGAACTGCAACGCGTGCGTGAGGGATGACGTCGCAGACTCGAACCGTGTGAGGAAGAAGAACACGAAACCGAACCCTTACGCGGAGGAGGCGCTCCGTTCGGGCGTTCCGATCCGCGTGCTGAAGGACGTGACGTCGCGGAGTCTCATCGGGGACAAGTACGTGATAGGTAGGGAGCTAGGTCGGGGGGAGTTCGGAATAACGTACCTGTGCACGGACCGGGAGACGAAGCAGGAGCTGGCCTGCAAGTCCATCTCCAAGCGCAAGCTCAGGACCGCCGTCGACGTCGAGGACGTGCGCCGCGAGGTGGCCATCATGTCCACGCTGCCGGACCACGCCAACGTCGTCAAGCTCAAAGCCACTTACGAGGACCAGGAGAACGTTCACCTAGTCATGGAGCTCTGTGCCGGTGGCGAACTCTTCGACCGGATCGTCGCACGTGGCCACTACAGCGAGCGTGCGGCCGCGCACGTCGCGAGAACCATTGCTGAGGTCGTCAGAATGTGTCACGCCAATGGCGTCATGCATCGAGACCTTAAGCCCGAGAATTTCCTCTTTGCGAATAAGAAGGAGAATTCTGTACTTAAAGCCATTGATTTCGGTCTCTCCGTGTTTTTCAAACCTGGGGAGAGATTTTCCGAAATTGTGGGGAGTCCTTACTATATGGCACCAGAGGTATTGAAGAGGAATTATGGACCAGAAGTGGATGTGTGGAGTGCTGGGGTGATTCTTTATATTTTGTTGTGTGGGGTTCCTCCGTTTTGGGCAGAGGACGAACGAGGGGTGGCTCTGGCGATTTTGAGAGGAGTGATTGACTTCAAGAGAGAACCGTGGCCTCAGATTTCGGACAGTGCTAAGAGCCTTGTGCGCCACATGTTGGAGCCTGATCCTAAGAAGCGCTTGACGGCTGAACAAGTGCTTGAGCATCCCTGGTTGCAAAATGCAAAGAAAGCTTCAAATGTTCCGTTAGGAGATATTGTGAGGACAAGGCTTAAGCAGTTCTCTGTCATGAATAGATTCAAAAAGAGAGCACTTCGGGTAATTGCAGAGCACTTATCTGTTGAAGAGGTAGAAATCATCAAAGACATGTTTACATTGATGGATACTGACAAAGATGGCAAGGTAACATACGAGGAACTGAAGGCTGGGTTGAGGAAGGTTGGTTCACAATTGGATGAGCCCGAGATTAAGATGCTGATGGATGTGGCCGATGTTGATGGGAATGGAGTACTTGACTATGGAGAGTTCGTGGCCGTGACAATTCACTTGCAAAGAATGGAGAATGATGAACATTTCCGAAAAGCATTCATGTTTTTTGACAAAGACGGGAGTGGCTATATTGAGTTTGGGGAGCTAGAGACAGCATTAGTAGATGAGTCGGGAGAAAATGACACTGCTGTATTGAATGACATCATGCGTGAAGTTGACACTGACAAGGATGGTCGCATCAGTTATGAAGAGTTTGTGGCCATGATGAAAACTGGAACTGATTGGAGAAAAGCATCTAGACAGTATTCAAGAGAGAGATTCAAGAGCTTGAGCATAAATTTGATGAAGGATGGGTCACTTCAGCTTCATGACGGTATTAGTGGTCAAGCTGTAGTGGTTTGA 1614 0.5012 MGNCNACVRDDVADSNRVRKKNTKPNPYAEEALRSGVPIRVLKDVTSRSLIGDKYVIGRELGRGEFGITYLCTDRETKQELACKSISKRKLRTAVDVEDVRREVAIMSTLPDHANVVKLKATYEDQENVHLVMELCAGGELFDRIVARGHYSERAAAHVARTIAEVVRMCHANGVMHRDLKPENFLFANKKENSVLKAIDFGLSVFFKPGERFSEIVGSPYYMAPEVLKRNYGPEVDVWSAGVILYILLCGVPPFWAEDERGVALAILRGVIDFKREPWPQISDSAKSLVRHMLEPDPKKRLTAEQVLEHPWLQNAKKASNVPLGDIVRTRLKQFSVMNRFKKRALRVIAEHLSVEEVEIIKDMFTLMDTDKDGKVTYEELKAGLRKVGSQLDEPEIKMLMDVADVDGNGVLDYGEFVAVTIHLQRMENDEHFRKAFMFFDKDGSGYIEFGELETALVDESGENDTAVLNDIMREVDTDKDGRISYEEFVAMMKTGTDWRKASRQYSRERFKSLSINLMKDGSLQLHDGISGQAVVV 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01296 537 ProSiteProfiles EF-hand calcium-binding domain profile. 392 427 IPR002048 GO:0005509
Phco8g01296 537 Gene3D - 322 497 - -
Phco8g01296 537 PANTHER SERINE/THREONINE-PROTEIN KINASE 47 489 - -
Phco8g01296 537 ProSitePatterns EF-hand calcium-binding domain. 441 453 IPR018247 -
Phco8g01296 537 Pfam Protein kinase domain 55 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g01296 537 FunFam Calcium-dependent protein kinase 7 322 497 - -
Phco8g01296 537 ProSitePatterns Protein kinases ATP-binding region signature. 61 84 IPR017441 GO:0005524
Phco8g01296 537 CDD EFh 432 494 IPR002048 GO:0005509
Phco8g01296 537 Gene3D Transferase(Phosphotransferase) domain 1 141 321 - -
Phco8g01296 537 SUPERFAMILY EF-hand 341 520 IPR011992 -
Phco8g01296 537 ProSitePatterns EF-hand calcium-binding domain. 405 417 IPR018247 -
Phco8g01296 537 FunFam Calcium-dependent protein kinase 1 57 140 - -
Phco8g01296 537 SMART serkin_6 55 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g01296 537 ProSitePatterns Serine/Threonine protein kinases active-site signature. 175 187 IPR008271 GO:0004672|GO:0006468
Phco8g01296 537 ProSiteProfiles EF-hand calcium-binding domain profile. 428 463 IPR002048 GO:0005509
Phco8g01296 537 ProSitePatterns EF-hand calcium-binding domain. 369 381 IPR018247 -
Phco8g01296 537 SMART efh_1 360 388 IPR002048 GO:0005509
Phco8g01296 537 SMART efh_1 396 424 IPR002048 GO:0005509
Phco8g01296 537 SMART efh_1 468 496 IPR002048 GO:0005509
Phco8g01296 537 SMART efh_1 432 460 IPR002048 GO:0005509
Phco8g01296 537 SUPERFAMILY Protein kinase-like (PK-like) 51 321 IPR011009 -
Phco8g01296 537 Gene3D Phosphorylase Kinase; domain 1 56 140 - -
Phco8g01296 537 ProSiteProfiles EF-hand calcium-binding domain profile. 464 499 IPR002048 GO:0005509
Phco8g01296 537 ProSiteProfiles EF-hand calcium-binding domain profile. 356 391 IPR002048 GO:0005509
Phco8g01296 537 ProSiteProfiles Protein kinase domain profile. 55 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g01296 537 Pfam EF-hand domain pair 361 420 IPR002048 GO:0005509
Phco8g01296 537 Pfam EF-hand domain pair 431 494 IPR002048 GO:0005509
Phco8g01296 537 ProSitePatterns EF-hand calcium-binding domain. 477 489 IPR018247 -
Phco8g01296 537 FunFam calcium-dependent protein kinase 13 141 321 - -
Phco8g01296 537 CDD STKc_CAMK 54 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01296 Phco-Chr8 13563151 13565993 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Phco8g01296 Pkinase 7.4e-75 CL0016