Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01279 ATGTCTCGCTCCTGCGCTGCTACAGACTCCGTTGCCTCTGGCGAGATCATGCTGTTCGGGGTTCGAGTCGTCGTCGATTCCATGAGGAAGAGCGTCAGCATGAACAACCTCTCACAGTACGAGCATCCGCAAGACGGTAACAACAATAACAACACCAACAACATCAAAAAGGAAGTTCTCACCGCCGGTTATGCCTCAGCCGATGACGCTGTTCCTCAGAACTCCGTCCGTCATCGCGAGCGGGAGCGGAAGCGAGGAGTTCCGTGGACGGAGGAAGAGCACAAACTGTTTTTGGTTGGATTGCAGAAGGTAGGGAAAGGTGATTGGAGAGGAATCTCTAAAAACTACGTGAAAACACGCACTCCGACGCAGGTTGCGAGCCATGCTCAGAAGTACTTTCTCCGCAGAAGCAACCTCAATCGCCGTCGCCGTAGATCCAGCCTATTCGACATCACCACTGACACGGTCTCTGCAATTCCAATGGAGGATGAACAGGTCCAGAATCAAGACACCCTGTCTCATTCACAACCTCTGTGCCCTGCAATTCCTGAAACTAGCAAAAGTGGATTTCCAATGATGCCAGTTTATCAGTTTGGGGTTGGTTCTGGAGTGATTTCAGTCCAAGGTGGGAAACCATTAGAAGAACTCACTCTGGGACAAGGAAACATAGAACACAAGGTGCCAATCAATCTGGTCCGTGCAATTCCTGTTGTTGCAGATCCTAAAGCACCCGCAGTGTCTGATATCGTCACCCCAAGTTCTAGTTCTGCAGTTGACCTACCCACACTGTCCTTGGGGCTATCCTTCTCTTCTGACCAAAGGCAAACATCATCAAGACATTCTGCTTTACATGCCATACCACGTTTCAGCAATGGAGATAGCGTCATTAGTGTTGCTTGA 900 0.4989 MSRSCAATDSVASGEIMLFGVRVVVDSMRKSVSMNNLSQYEHPQDGNNNNNTNNIKKEVLTAGYASADDAVPQNSVRHRERERKRGVPWTEEEHKLFLVGLQKVGKGDWRGISKNYVKTRTPTQVASHAQKYFLRRSNLNRRRRRSSLFDITTDTVSAIPMEDEQVQNQDTLSHSQPLCPAIPETSKSGFPMMPVYQFGVGSGVISVQGGKPLEELTLGQGNIEHKVPINLVRAIPVVADPKAPAVSDIVTPSSSSAVDLPTLSLGLSFSSDQRQTSSRHSALHAIPRFSNGDSVISVA 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01279 299 ProSiteProfiles Myb-like domain profile. 81 133 IPR001005 -
Phco8g01279 299 MobiDBLite consensus disorder prediction 73 87 - -
Phco8g01279 299 MobiDBLite consensus disorder prediction 66 87 - -
Phco8g01279 299 FunFam transcription factor MYB1R1 87 138 - -
Phco8g01279 299 ProSiteProfiles SANT domain profile. 84 137 IPR017884 -
Phco8g01279 299 PANTHER TRANSCRIPTION FACTOR KUA1 3 225 - -
Phco8g01279 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 81 137 IPR017930 -
Phco8g01279 299 Gene3D - 87 139 - -
Phco8g01279 299 SUPERFAMILY Homeodomain-like 83 138 IPR009057 -
Phco8g01279 299 Pfam Myb-like DNA-binding domain 88 133 IPR001005 -
Phco8g01279 299 CDD SANT 88 133 IPR001005 -
Phco8g01279 299 SMART sant 85 135 IPR001005 -
Phco8g01279 299 NCBIfam myb-like DNA-binding domain, SHAQKYF class 84 135 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01279 Phco-Chr8 13389382 13390865 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Phco8g01279 Myb_DNA-binding 3.6e-12 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01279 8 13389382 13390865 Phco8g01279 8 13389382 13390865 ECH
Phco8g01279 8 13389382 13390865 Phco7g02193 7 38795993 38798894 PCT