LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco8g01267	ATGGCTTCTTCAGATCCCATCTCTTCCAAACACTACACTTACAACAGAAAACAGAAGTCCCTAGGACTTTTGTGCACCAATTTCTTGAGTCTCTATAACCGAGACGCAGTGCACTTAATTGGCCTTGATGACGCTGCCACTCGATTAGGAGTCGAGAGAAGACGGATCTACGACATTGTTAACGTTCTCGAGAGTATTGGGGTTCTCTCAAGGAAAGCGAAAAATCAGTATACCTGGAAAGGTTTTGCTGCAATTCCTCTCACTCTTCGGGAGCTCAAAGAAGATGGTCTGAGAGAGAATTCCAATTCCTTGCGCGGGTCCACTAACGACGACATGGATAAAGTGTCCGATGATGAAGATGATGAAGAAACACAGTCCAACGCCGCTACTGGAAGTCAAAATGACAAATTGAACCCTAAATCTACTCAACCCAGATCACTAAAAAATGAAAATCGAAGGGAAAAATCTTTGGCTCTGCTGACCCAGAATTTTGTCAAGCTCTTTGTGTGCTCTAATGTGAGGGTTACCACAAGTTTCTTGACCGTTGAATTGATCTCCCTTGACGAGGCTGCAAAATTGTTGCTTGGAGATGCTCACAATACTTCAATAATGAGAACAAAAGTTAGACGCCTATATGACATCGCAAATGTGCTATCATCCATGAACCTTATTGAGAAGACCCATACGTCAGATACAAGAAAACCAGCATTCAGGTGGCTGGGTCCTGAAGGGAAGACATGGAATGAGTCACTTCACAAATCAAATCAGAACGACTCTAGGAAAAGGGCGTTTGGAAGTGATATTACAAACATCAGTTTTGAGAGGAGTAAGGTGGAGTTATTCACAAATGGAGACTTAAATTCGAATCCTAAGAAGCTAAAAATTGAAAACGATATAGGGCCGAGTCAGGCAGATGAAAACAATTTAAAACAAGACACAAAACAAACTTCGAAAAGCTATCAGTTTGGTCCTTTTGCTCCAGCGTGCGTGCCCAGAGTTGGAGCCTCTGGGAATCATAATGCGAAGCAGGTGCATGACTGGAACGGTCTAGTGAATGCACACAGCCCTCAGTATCAAAACGAAGCTTTGAGAGATCTCTTTTCGCATTACATGGAGGCATGGAAATCGTGGTACTCTGAGATTGCTGCGAAGAGACCATTACAAATTTTGTAA	1173	0.428	MASSDPISSKHYTYNRKQKSLGLLCTNFLSLYNRDAVHLIGLDDAATRLGVERRRIYDIVNVLESIGVLSRKAKNQYTWKGFAAIPLTLRELKEDGLRENSNSLRGSTNDDMDKVSDDEDDEETQSNAATGSQNDKLNPKSTQPRSLKNENRREKSLALLTQNFVKLFVCSNVRVTTSFLTVELISLDEAAKLLLGDAHNTSIMRTKVRRLYDIANVLSSMNLIEKTHTSDTRKPAFRWLGPEGKTWNESLHKSNQNDSRKRAFGSDITNISFERSKVELFTNGDLNSNPKKLKIENDIGPSQADENNLKQDTKQTSKSYQFGPFAPACVPRVGASGNHNAKQVHDWNGLVNAHSPQYQNEALRDLFSHYMEAWKSWYSEIAAKRPLQIL	390

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco8g01267	390	MobiDBLite	consensus disorder prediction	126	145	-	-
	Phco8g01267	390	FunFam	E2F transcription factor-like E2FE	147	243	-	-
	Phco8g01267	390	FunFam	E2F transcription factor 8	11	83	-	-
	Phco8g01267	390	SUPERFAMILY	"Winged helix" DNA-binding domain	154	242	IPR036390	-
	Phco8g01267	390	Gene3D	-	11	83	IPR036388	-
	Phco8g01267	390	Gene3D	-	147	242	IPR036388	-
	Phco8g01267	390	SUPERFAMILY	"Winged helix" DNA-binding domain	15	79	IPR036390	-
	Phco8g01267	390	SMART	E2F_TDP_2	16	81	IPR003316	GO:0005667\|GO:0006355
	Phco8g01267	390	SMART	E2F_TDP_2	152	241	IPR003316	GO:0005667\|GO:0006355
	Phco8g01267	390	MobiDBLite	consensus disorder prediction	98	151	-	-
	Phco8g01267	390	PANTHER	TRANSCRIPTION FACTOR E2F	9	351	IPR015633	GO:0000978\|GO:0006357
	Phco8g01267	390	Pfam	E2F/DP family winged-helix DNA-binding domain	154	241	IPR003316	GO:0005667\|GO:0006355
	Phco8g01267	390	Pfam	E2F/DP family winged-helix DNA-binding domain	17	81	IPR003316	GO:0005667\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco8g01267	Phco-Chr8	13261129	13264151	Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	E2F-DP	Phco8g01267		E2F_TDP	5.1e-19	CL0123

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phco8g01267	8	13261129	13264151	Phco8g01267	8	13261129	13264151	ECH
	Phco8g01267	8	13261129	13264151	Phco7g02181	7	38668052	38673386	PCT