Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco8g01255 | ATGGCATCATTTGCAGGCACTACACAGAAGTGCACAGCTTGTGAAAAGAAAGTGTATTGGGTGGAACAGCTAACTGCTGACAACAAGTTGTACCACAAATCTTGCTTTAGATGTCTCCACTGCAAGGGCACGCTCAAGCTGGGTAATTATTGTTCCTTTGAGGGTGTCCTATACTGTAAGCCCCATTTTGATCAACTGTTTAAGATGACTGGCAGCTTGGAAAAAAGTTTTGAAGGTATTCCAAGAATTGCTAGAGTTGAAAGATCTGCTGATCAGGTCCAAACCAACAACAAGGTTTCAAGGTTGTTTTCTGGAACTCAGGAAAAGTGTGTTGTTTGCAAGAAAACAGTGTACCCAATTGAAAAGGTGGCTGTTGATGGAAAATCTTACCACAAGTCTTGTTTCAGATGCACCCATGGAGGTTGTGTGATCAGCCCATCAAATTATGTTGCCCATGAACATCGTCTTTATTGCAGACACCACCATACTCAGCTGTTTAAGCAAAAGGGCAACTTCAGTCAATTAGTCAAGCGTGAAAATCTCAAACTCACCACTCAAAACACTACACAATTACATCCAAGTAATGGCAGTGCAAGTCCAGTTCAAGACTCTTCTTAG | 618 | 0.4175 | MASFAGTTQKCTACEKKVYWVEQLTADNKLYHKSCFRCLHCKGTLKLGNYCSFEGVLYCKPHFDQLFKMTGSLEKSFEGIPRIARVERSADQVQTNNKVSRLFSGTQEKCVVCKKTVYPIEKVAVDGKSYHKSCFRCTHGGCVISPSNYVAHEHRLYCRHHHTQLFKQKGNFSQLVKRENLKLTTQNTTQLHPSNGSASPVQDSS | 205 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco8g01255 | 205 | Pfam | LIM domain | 11 | 65 | IPR001781 | - | |
| Phco8g01255 | 205 | Pfam | LIM domain | 110 | 165 | IPR001781 | - | |
| Phco8g01255 | 205 | FunFam | LIM domain and actin-binding 1 | 5 | 75 | - | - | |
| Phco8g01255 | 205 | ProSitePatterns | LIM zinc-binding domain signature. | 11 | 45 | IPR001781 | - | |
| Phco8g01255 | 205 | ProSiteProfiles | LIM domain profile. | 9 | 69 | IPR001781 | - | |
| Phco8g01255 | 205 | Gene3D | Cysteine Rich Protein | 5 | 75 | - | - | |
| Phco8g01255 | 205 | Gene3D | Cysteine Rich Protein | 104 | 174 | - | - | |
| Phco8g01255 | 205 | SMART | lim_4 | 10 | 62 | IPR001781 | - | |
| Phco8g01255 | 205 | SMART | lim_4 | 109 | 161 | IPR001781 | - | |
| Phco8g01255 | 205 | PANTHER | OS06G0237300 PROTEIN | 2 | 94 | - | - | |
| Phco8g01255 | 205 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 102 | 135 | - | - | |
| Phco8g01255 | 205 | FunFam | LIM domain and actin-binding 1 | 104 | 174 | - | - | |
| Phco8g01255 | 205 | CDD | LIM2_SF3 | 110 | 170 | - | - | |
| Phco8g01255 | 205 | ProSiteProfiles | LIM domain profile. | 108 | 168 | IPR001781 | - | |
| Phco8g01255 | 205 | MobiDBLite | consensus disorder prediction | 185 | 205 | - | - | |
| Phco8g01255 | 205 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 37 | 77 | - | - | |
| Phco8g01255 | 205 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 3 | 36 | - | - | |
| Phco8g01255 | 205 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 136 | 175 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco8g01255 | Phco-Chr8 | 13137858 | 13140522 | Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | LIM | Phco8g01255 | LIM | 1.5e-10 | CL0167 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Phco8g01255 | 8 | 13137858 | 13140522 | Phco8g01255 | 8 | 13137858 | 13140522 | ECH | |
| Phco8g01255 | 8 | 13137858 | 13140522 | Phco7g02166 | 7 | 38447037 | 38450336 | PCT |