Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01142 ATGCTCAATTGCGTGGACACGTGGACGGTAAGATTTCATCTGAACCGCCTCCACGGTCGTTATTATTGGGCTAACATCGAGATTAGGGTTTCAGCAGCTGAGGCTCTATCTTCACACAAGCATATTTTCTCTTTCATCTTAGTATTTCTCTTCTTTGAAGTTTTCGTAGTGCTTCGAATCATGGAGATGGAACGCGTCTTCGAATTTCCTCACTCTCACATGGATCGGCGACCGAGAAAGAGAGCGAGGTTGGGCTGGGACATTCCTGAGGTCCCTAAGGCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGGCTATTTCAAGCTATGCTCCTTCAAGGGGTCCCTCAGAACATACCACTTGTTCCCTATTTGTTAAGGCTGTTGCTCAAAATGGTTCTCCCCCTTGGCGAGATGATGACAAAGATGGACATTACATGTTTGCGCTTGGAGAAAATTTAACTTCTCGCTATAAGATCCATAGCAAAATGGGCGAAGGAACTTTTGGGCAGGTCTTAGAATGCTGGGACCGAGAAAGGAAGGAAATGGTTGCAATTAAAATTGTTCGTGGGATAAAGAAGTACCGAGAAGCAGCCATGATAGAAATTGAAGTGTTGCAACAGCTTGGTAAACATGATAAAGGAGGCAATCGTTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTGTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGCGAGATTGGCAGACAACTATTGGAATGTATAGCATTCATGCATGATTTGCGTATGATTCATACTGATCTGAAGCCTGAAAACATATTACTAGTTTCACCAGAGTATGTCAAAGTGCCTGACTACAAGAGTTCATCTAGATCACCAAGTACCTATTTCAAGAGGGTTCCCAAATCTAGCGCCATAAAGGTTATTGATTTTGGCAGCACCACTTTCGAGCGAGAAGATCAGACTTACATTGTATCAACTCGTCATTATAGAGCTCCTGAAGTTATCCTTGGACTTGGCTGGAGCTATCCATGTGATATATGGAGTGTAGGATGTATATTGGTTGAATTATGCACGGGCGAAGCTTTATTTCAGACTCATGAAAATTTAGAACATCTTGCTATGATGGAAAGGGTACTTGGCCCTTTACCACAGCACATGTTGAAGAGAGTCGACCGAAATGCCGACAAGTATGTTAGGAGGGGTAGATTAGACTGGCCCGAGGGTGCAACCTCGAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGAACCTTGTAATGCAGCATGTAGATCATTCAGCAGGCGATCTCATACATCTGTTGCAGGGATTACTTAGATTTGATCCCTCTGAAAGACTTACAGCCAAGGAAGCCCTTAGATATCCCTTCTTTATGAGAGATCACTTTAGGAGATAA 1473 0.4297 MLNCVDTWTVRFHLNRLHGRYYWANIEIRVSAAEALSSHKHIFSFILVFLFFEVFVVLRIMEMERVFEFPHSHMDRRPRKRARLGWDIPEVPKAQVGLFCGQDVGAISSYAPSRGPSEHTTCSLFVKAVAQNGSPPWRDDDKDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEVLQQLGKHDKGGNRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNNYRSFPIDLVREIGRQLLECIAFMHDLRMIHTDLKPENILLVSPEYVKVPDYKSSSRSPSTYFKRVPKSSAIKVIDFGSTTFEREDQTYIVSTRHYRAPEVILGLGWSYPCDIWSVGCILVELCTGEALFQTHENLEHLAMMERVLGPLPQHMLKRVDRNADKYVRRGRLDWPEGATSRESIKAVMKLPRLQNLVMQHVDHSAGDLIHLLQGLLRFDPSERLTAKEALRYPFFMRDHFRR 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01142 490 Gene3D Transferase(Phosphotransferase) domain 1 212 483 - -
Phco8g01142 490 ProSitePatterns Serine/Threonine protein kinases active-site signature. 279 291 IPR008271 GO:0004672|GO:0006468
Phco8g01142 490 SUPERFAMILY Protein kinase-like (PK-like) 145 487 IPR011009 -
Phco8g01142 490 FunFam Serine/threonine-protein kinase AFC2 234 483 - -
Phco8g01142 490 Gene3D Phosphorylase Kinase; domain 1 145 238 - -
Phco8g01142 490 Pfam Protein kinase domain 158 483 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g01142 490 CDD PKc_CLK 145 483 - -
Phco8g01142 490 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 61 486 - -
Phco8g01142 490 FunFam Serine/threonine-protein kinase AFC2 145 238 - -
Phco8g01142 490 ProSiteProfiles Protein kinase domain profile. 158 483 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g01142 490 SMART serkin_6 158 483 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01142 Phco-Chr8 12036825 12040604 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Phco8g01142 Pkinase 2.4e-49 CL0016