Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01107 ATGCCTGTAAATCCATGGACCCTCTTCTTCTTATGCATTTCCCTTCTACTCCCATTCCATTTTCTCATAGCTGCTGCAGTGAACCAACAAGGGGAGGCTCTTCTATCATGGACGAGAGCCCTGAACGGGTCCCTGGAGGTATTGAGTAACTGGGACCCAGTTCAAGACACCCCATGTAGCTGGTATGGAGTGAGTTGCAACACGAAGAACGAAGTAGTACAGCTGGATCTGAGGTATGTGGATTTGCTTGGAAGACTGCCCAGTGATTTCACCTCATTGCTTTCCTTAAGCAGTCTGATCTTAGCCGGAACCAATCTCACGGGTTCAATTCCAAAAGAAATAGGTTACCTGGTGGAACTCAGCTACTTGGACTTAAGTGACAATGCCTTGAGTGGCGAAATACCAAGTGAGCTATGTTACTTGCCTAAACTTGAGGAACTCCATCTCAACTCCAATGACCTCATGGGGTCCATTCCAGTTGCAATTGGGAACCTCACAAAGTTGCAGAAGCTGATCCTATACGACAACCAACTCAGCGGGGAAGTTCCTACCACCATCGGCAACCTTAAGAGACTTCAAGTGATAAGAGCAGGAGGAAACAAGAACCTGGAGGGTCCCTTACCACAAGAAATTGGTAACTGTTCCAGTTTAGTGATGTTGGGCCTTGCTGAAACAAGCCTCTCAGGTTCTCTGCCCCCAACTCTTGGCCTTCTGAAGAACCTTGAAACCATTGCCATTTACACTTCCTTACTCTCAGGTGAAATACCACCTGAACTTGGGGATTGCACAGGACTCCAAAACATTTACCTTTACGAGAACTCTCTCACTGGATCCATACCAAGCAAGTTGGGAAACCTTAAGAATCTCGAAAACCTTCTACTGTGGCAGAACAACCTAGTTGGCACCATGCCCCCCGAGATTGGCGACTGCGAGCAGTTGTCAGTGATTGACGTGTCAATGAACTCACTAACCGGAAGCATTCCCAACACTTTCGGGAACTTGACATCATTGCAAGAGCTCCAACTCAGTGTGAACCAGATTTCGGGGGAGATTCCAGGAGAACTGGGGAAGTGTCAGCAACTCACACATGTGGAGCTTGACAACAATCTCATCACGGGTACCATACCTTCCGAATTGGGAAACCTTGCGAATCTAACGCTCTTGTTCTTATGGCACAACAAGCTGCAAGGTAACATTCCCTCTTCCCTTTCCAATTGTCAAAACCTAGAGGCTATTGATCTGTCACAGAATGGATTAACGGGTCCCATACCCAAGGGCATATTCCAGCTCAAGAATCTCAACAAGCTCTTGCTCCTATCCAATAATCTCTCGGGGAAAATCCCCTCTCAGATTGGGAATTGTTCTTCCCTAATTCGATTCCGAGCCAACGACAACAACATCACCGGGAATGTTCCCTCGCAGATTGGGAATCTCAACAATTTGAATTTCCTCGACCTGGGGAACAATCGGATTTCCGGCGATATCCCGGAGGAGATCTCCGGATGCCGGAATCTCGCATTTCTTGATATACATTCTAACTTTCTCTCCGGAAACCTACCGGAAAGTTTGAGCCGGCTTAATGCGCTTCAGTTTCTCGATGTTTCCGATAACATGATCGAAGGTACACTAGATCCTACCGTCGGCGAACTCACCGCGCTCTCCAAGCTTGTTCTCGCGAAGAATCGAATCTCTGGCTCCATTCCAAGTCAAATCGGGTCTTGTTCCAAATTACAATTACTGGATCTCAGCAGCAACAATCTCTCCGGCCAAATCCCCGGCAGCATCGGCAACATTCCGGCATTGGAAATCGCTCTGAATCTGAGCCTGAACCAGCTATCCGGCGAGATCCCTCCGGAGTTTTCCGGATTGACGAAGCTCGGTGTGATGGACATATCTCACAATGCTCTCAGCGGAAACCTTCAGTATCTCGCGGGACTGCAAAATCTGGTGGTGCTCAATATCTCGAATAACAAATTCTCGGGACGTGTTCCGGACACGCCTTTCTTCGCGAAGCTGCCCCTGAGTGTACTGGCGAGGAACCCTGCGCTGTGCTTTTCCGGCAACGAGTGCAGCGGCGACAGCGGCGGGAGGTCGGGACGGCGGGCGAGGGTAGCGCGCGTGGTGATGGTGGTGTTGCTGTGCACCGCGTGCGTGCTGCTCGTGGCGGCGCTGTACGTCGTCGTTGCAGCAAAACGGCGAGGGGACCGCGAAAACGACGTGGAGCTAGATGGAAAGGACAGCGACGTGGACATGGCCCCACCTTGGGAGGTGACCCTGTACCAGAAACTCGATTTGTCCATCTCTGACGTAGCGAAATGTCTCACTGCTGGCAATGTCATCGGCCAAGGTCGATCCGGTGTCGTGTATAGAGTCGACTTGCCGGGAACGGGACTCGCCATCGCGGTGAAGAAGTTTCGGTTGTCAGAGAAATTCTCCGCTGCGGCGTTCTCGTCGGAGATTGCCACGCTCGCGCGAATCCGTCACCGGAACATCGTGCGGCTGCTGGGTTGGGGGGCGAACAGGAGATCCAAGTTACTGTTCTACGATTATTTACCGAACGGTAACCTGGACACGCTGTTACACGACGGGTGCACAGGATTAATTGATTGGGAGACGAGGCTCAAGATAGCGTTGGGCGTGGCTGAGGGCGTGGCTTACTTGCACCACGATTGCGTGCCTGCTGCTATCCTGCACCGGGACGTCAAGGCGCAGAACATTTTGTTAGGAGACAGATATGAGCCCTGTTTGGCGGATTTTGGTTTCGCTCGATTCGTGGAAGAGGATCACGCCTCCTTTTCGGTGAATCCACATTTCGCCGGCTCCTACGGTTACATTGCCCCTGAGTACGCTTGCATGCTTAAAATCACAGAGAAGAGCGACGTGTACAGCTTCGGCGTGGTCCTACTGGAGATAATAACGGGGAAAAGGCCAATGGATCCATCATTCCCGGATAGCCAACATGTTATTCAGTGGGTCAGGGAGCACCTCAAGAGCAAGAAGGACCCGATCCAGGTTCTCGATTCCAAGCTCCAAGGCCATCCAGACACACAAATCCAAGAGATGCTACAAGCACTTGGTATTGCCCTCTTGTGCACAAGTAATCGTGCAGAGGATCGACCCACAATGAAAGATGTTGCAGCATTATTGAGAGAAATTCGTCACGATCCTCCACCAGGTGCTGAGCCCCACAAGCCCAAACCCAAAACAACTCAAGCTTCCTCCTTTTCCTCCTCCTCTGTCACCCCTGCTCAGTTGTTGCTCCTACAATCTACTTCCAACTCCTCATCACTTGCTTATTCCTCTTCCTCCGCAGCAGCCTACCTTCCTCCAAGGAATCAATCCTCAATTCAAATTTAA 3357 0.5076 MPVNPWTLFFLCISLLLPFHFLIAAAVNQQGEALLSWTRALNGSLEVLSNWDPVQDTPCSWYGVSCNTKNEVVQLDLRYVDLLGRLPSDFTSLLSLSSLILAGTNLTGSIPKEIGYLVELSYLDLSDNALSGEIPSELCYLPKLEELHLNSNDLMGSIPVAIGNLTKLQKLILYDNQLSGEVPTTIGNLKRLQVIRAGGNKNLEGPLPQEIGNCSSLVMLGLAETSLSGSLPPTLGLLKNLETIAIYTSLLSGEIPPELGDCTGLQNIYLYENSLTGSIPSKLGNLKNLENLLLWQNNLVGTMPPEIGDCEQLSVIDVSMNSLTGSIPNTFGNLTSLQELQLSVNQISGEIPGELGKCQQLTHVELDNNLITGTIPSELGNLANLTLLFLWHNKLQGNIPSSLSNCQNLEAIDLSQNGLTGPIPKGIFQLKNLNKLLLLSNNLSGKIPSQIGNCSSLIRFRANDNNITGNVPSQIGNLNNLNFLDLGNNRISGDIPEEISGCRNLAFLDIHSNFLSGNLPESLSRLNALQFLDVSDNMIEGTLDPTVGELTALSKLVLAKNRISGSIPSQIGSCSKLQLLDLSSNNLSGQIPGSIGNIPALEIALNLSLNQLSGEIPPEFSGLTKLGVMDISHNALSGNLQYLAGLQNLVVLNISNNKFSGRVPDTPFFAKLPLSVLARNPALCFSGNECSGDSGGRSGRRARVARVVMVVLLCTACVLLVAALYVVVAAKRRGDRENDVELDGKDSDVDMAPPWEVTLYQKLDLSISDVAKCLTAGNVIGQGRSGVVYRVDLPGTGLAIAVKKFRLSEKFSAAAFSSEIATLARIRHRNIVRLLGWGANRRSKLLFYDYLPNGNLDTLLHDGCTGLIDWETRLKIALGVAEGVAYLHHDCVPAAILHRDVKAQNILLGDRYEPCLADFGFARFVEEDHASFSVNPHFAGSYGYIAPEYACMLKITEKSDVYSFGVVLLEIITGKRPMDPSFPDSQHVIQWVREHLKSKKDPIQVLDSKLQGHPDTQIQEMLQALGIALLCTSNRAEDRPTMKDVAALLREIRHDPPPGAEPHKPKPKTTQASSFSSSSVTPAQLLLLQSTSNSSSLAYSSSSAAAYLPPRNQSSIQI 1118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01107 1118 FunFam LRR receptor-like serine/threonine-protein kinase 524 599 - -
Phco8g01107 1118 SMART LRR_typ_2 165 189 IPR003591 -
Phco8g01107 1118 SMART LRR_typ_2 117 141 IPR003591 -
Phco8g01107 1118 SMART LRR_typ_2 646 670 IPR003591 -
Phco8g01107 1118 SMART LRR_typ_2 478 502 IPR003591 -
Phco8g01107 1118 SMART LRR_typ_2 430 454 IPR003591 -
Phco8g01107 1118 SMART LRR_typ_2 286 310 IPR003591 -
Phco8g01107 1118 SMART LRR_typ_2 382 406 IPR003591 -
Phco8g01107 1118 SMART LRR_typ_2 334 358 IPR003591 -
Phco8g01107 1118 SMART LRR_typ_2 550 574 IPR003591 -
Phco8g01107 1118 ProSitePatterns Protein kinases ATP-binding region signature. 780 804 IPR017441 GO:0005524
Phco8g01107 1118 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 27 200 - -
Phco8g01107 1118 Pfam Leucine rich repeat 312 371 IPR001611 GO:0005515
Phco8g01107 1118 Pfam Leucine rich repeat 95 154 IPR001611 GO:0005515
Phco8g01107 1118 Pfam Leucine rich repeat 552 612 IPR001611 GO:0005515
Phco8g01107 1118 SMART LRR_sd22_2 117 149 - -
Phco8g01107 1118 SMART LRR_sd22_2 478 501 - -
Phco8g01107 1118 SMART LRR_sd22_2 623 648 - -
Phco8g01107 1118 SMART LRR_sd22_2 526 541 - -
Phco8g01107 1118 SMART LRR_sd22_2 574 600 - -
Phco8g01107 1118 SMART LRR_sd22_2 262 288 - -
Phco8g01107 1118 SMART LRR_sd22_2 382 411 - -
Phco8g01107 1118 SMART LRR_sd22_2 165 191 - -
Phco8g01107 1118 Gene3D Ribonuclease Inhibitor 435 691 IPR032675 -
Phco8g01107 1118 ProSiteProfiles Protein kinase domain profile. 774 1049 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g01107 1118 SUPERFAMILY L domain-like 472 685 - -
Phco8g01107 1118 ProSiteProfiles Leucine-rich repeat profile. 480 502 IPR001611 GO:0005515
Phco8g01107 1118 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 201 424 - -
Phco8g01107 1118 SUPERFAMILY L domain-like 255 537 - -
Phco8g01107 1118 Gene3D Phosphorylase Kinase; domain 1 756 850 - -
Phco8g01107 1118 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 345 1044 - -
Phco8g01107 1118 Gene3D Ribonuclease Inhibitor 27 180 IPR032675 -
Phco8g01107 1118 Gene3D Ribonuclease Inhibitor 181 281 IPR032675 -
Phco8g01107 1118 FunFam LRR receptor-like serine/threonine-protein kinase 763 850 - -
Phco8g01107 1118 SUPERFAMILY L domain-like 45 372 - -
Phco8g01107 1118 SMART serkin_6 774 1049 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g01107 1118 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 851 1066 - -
Phco8g01107 1118 ProSitePatterns Serine/Threonine protein kinases active-site signature. 896 908 IPR008271 GO:0004672|GO:0006468
Phco8g01107 1118 Gene3D Ribonuclease Inhibitor 362 431 IPR032675 -
Phco8g01107 1118 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
Phco8g01107 1118 Pfam Protein kinase domain 777 1045 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g01107 1118 Gene3D Ribonuclease Inhibitor 282 361 IPR032675 -
Phco8g01107 1118 MobiDBLite consensus disorder prediction 1053 1077 - -
Phco8g01107 1118 FunFam Putative LRR receptor-like serine/threonine-protein kinase 604 689 - -
Phco8g01107 1118 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 425 519 - -
Phco8g01107 1118 Gene3D Transferase(Phosphotransferase) domain 1 851 1060 - -
Phco8g01107 1118 SUPERFAMILY Protein kinase-like (PK-like) 768 1079 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01107 Phco-Chr8 11619146 11623062 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Phco8g01107 Pkinase 4.6e-41 CL0016