Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01085 ATGCTTCATATCAATTGCCATGCAATTAATGCATTCTCAATCTCTCTCTCATATAAGGAACACAAACGGAGATGGTTTGAAACGCAAATATTTCCCTCAGTTTCAGTTTCTGTTACTCCTCTCATGGACATTGAAGCAGACCTCACAGAAAACTATGCCTCTCAGCCAATGCATGTGCAAGAAAACTGCTCGAAACCCAGCATGGGGGATGAGCTTCATTTTGGAGCTCCTTCCTCACAGGGTTTCTTGCAAGATTTTCATCATATTGATCAGTTCTCTGTGAATAATGGCTCCTCATCCAATCCCATTTTCGGGGTACACACTCCAAATTTTGATCCCTTTGATCATAATGTAAACTGTGAGTCTGCACCTCCTGATTTTGAAGTTTTTGAGTGCAAGCCTATTGCTGAGAGTAATGGTAGTGCACATGCTCATCTGATGCACAATTTCCAATATGTAGGTTATAGTTTGAACCTCCCTCGGACGAATCAAATGGATATGGTGGTGGCAAACCAAAGATACCTGCCCTTCAATGCTCTAGAAACCAAACCTTTGAATTTTGTTGTACCAGATGAAGTCTCATGCATATCCCCACCTAATTATTATAAGAGAGTTGGTTTAAATAAAAACCTTAGGGAGTCCCCAACAACTAGGAGAACATTCAAAGCTCGGAAGAAATCCAACATAGTGAAGGGGCAATGGACATCAGATGAAGACAGATTGTTGATTCAACTGGTCGACCAATATGGAGTGAGGAAGTGGTCCCACATAGCTCAGGCGTTGCCTGGGAGAATAGGGAAGCAATGCAGAGAACGATGGCATAACCATTTAAGGCCAGACATTAAGAAGGACATATGGACTGAAGAAGAGGATAGGATACTGATCCAAGCTCATGTGGAGATAGGAAACAAGTGGGCAGAGATTGCAAAAAAATTGACTGGAAGAACTGAAAACTCCATCAAAAACCATTGGAACGCAACAAAGAGAAGACAATATTCCAAAAGAAAATGTCGTTCAAAGTACCCTAGAGGCTCTCTTCTTCAGGAATATATCAAGAGCTTGAACTTAGACCAAAATCCACCAATGGACTATCGAAAAAAATCTGCTAAAAATGGCAGAGCTAAGACAAACAATAACGGCAAAGCAGCAGCTCAGCTCCTGTGTGTTGATCAATTCTGTCCCAATGGCCACTTGGTGCCTAAGTATGATTTTAACGAGGTCCCAGATTTTTGTTTGGATGATAACTTGTTTGAAGAGGGGTGTAGCATTGATTCTCTGCTAGATAATATACAAAGTGCTTCTACTATGGATGACAAAGATTTTGATGGAAAAGTACAATGTGCTCCAACTATGGAGGGAAAGCAATCTCATCAAGGAGGCATCATGCAGCGTGTTAATGTTGATGAGCATCATGAGACTGAGATGAGGGCACCAACTATGGGGATTGAAGTTAAGAAGGAGCTGGATTTGGTGGAGATGATATCATACCACGTTAATGAAAGTATTGGTATATAA 1515 0.4112 MLHINCHAINAFSISLSYKEHKRRWFETQIFPSVSVSVTPLMDIEADLTENYASQPMHVQENCSKPSMGDELHFGAPSSQGFLQDFHHIDQFSVNNGSSSNPIFGVHTPNFDPFDHNVNCESAPPDFEVFECKPIAESNGSAHAHLMHNFQYVGYSLNLPRTNQMDMVVANQRYLPFNALETKPLNFVVPDEVSCISPPNYYKRVGLNKNLRESPTTRRTFKARKKSNIVKGQWTSDEDRLLIQLVDQYGVRKWSHIAQALPGRIGKQCRERWHNHLRPDIKKDIWTEEEDRILIQAHVEIGNKWAEIAKKLTGRTENSIKNHWNATKRRQYSKRKCRSKYPRGSLLQEYIKSLNLDQNPPMDYRKKSAKNGRAKTNNNGKAAAQLLCVDQFCPNGHLVPKYDFNEVPDFCLDDNLFEEGCSIDSLLDNIQSASTMDDKDFDGKVQCAPTMEGKQSHQGGIMQRVNVDEHHETEMRAPTMGIEVKKELDLVEMISYHVNESIGI 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01085 504 SMART sant 282 330 IPR001005 -
Phco8g01085 504 SMART sant 230 279 IPR001005 -
Phco8g01085 504 CDD SANT 234 277 IPR001005 -
Phco8g01085 504 FunFam Transcriptional activator Myb isoform A 230 283 - -
Phco8g01085 504 FunFam Transcription factor MYB119 284 348 - -
Phco8g01085 504 PANTHER MYB PROTEIN-RELATED 204 370 - -
Phco8g01085 504 Gene3D - 230 283 - -
Phco8g01085 504 ProSiteProfiles Myb-like domain profile. 226 277 IPR001005 -
Phco8g01085 504 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 282 332 IPR017930 -
Phco8g01085 504 CDD SANT 286 328 IPR001005 -
Phco8g01085 504 ProSiteProfiles Myb-like domain profile. 278 328 IPR001005 -
Phco8g01085 504 SUPERFAMILY Homeodomain-like 228 324 IPR009057 -
Phco8g01085 504 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 226 281 IPR017930 -
Phco8g01085 504 Gene3D - 285 346 - -
Phco8g01085 504 Pfam Myb-like DNA-binding domain 231 277 IPR001005 -
Phco8g01085 504 Pfam Myb-like DNA-binding domain 286 325 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01085 Phco-Chr8 11444863 11446698 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco8g01085 Myb_DNA-binding 2e-16 CL0123