Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01050 ATGGATGTGGACATAGTGAAGGCTTCCGTGTGTGACACCGCCAACATGGACGTGATGGCAATGATGATGCAAATGGAAAAGTTTCCCGAATTCTGCGACCCTTTTTATACCACCACCCCACCTTACACAGAAGCAGACATGTTGTCAAGTGGAAGCTCCTCAACAAGCGTTTCCACCATTTTTAACAACGCAACTCCACCGCCTCTTGTTGATCCACCACCGCCAAATCTTCTCAATTTTTCCAACAATGACAACAACCTTATCCAACAACCTATGACACCTTCTCCCCATCCCCCACAACCCAGCACGTTTCCCTACCCTTCTGAGAAAAAAAACTCCATGGCGGCGATGAGGGAAATGATATTCCGAATAGCGGTGATGCAACCTATTCACATAGACCCTGAATCCATAAAGCCACCGAAGCGAAGGAACGTGAAGATTTCAAAGGATCCGCAGAGCGTTGCGGCGAGGCACAGAAGGGAAAGGATAAGCGAGAAGATAAGGATTCTTCAGAGATTAGTTCCAGGTGGCACCAAGATGGACACGGCATCGATGCTGGACGAGGCCATTCACTACGTGAAGTTCTTGAAAAAACAGGTGCAGACCCTGGAACAAGCAGGGGCAAATAGACAACACAATCACAATACTGTTGGTGCTGTCGGTTTCCCAATAGGGATGTCTAACTCCAACAATATTGTTAACTATTCTTCTTTGTTGATGAAGGGTTGCCAACCTTGTCAAGTGTTCGGTGGTTCTACTTCCAAACAATTGCTCAGCTAA 780 0.4679 MDVDIVKASVCDTANMDVMAMMMQMEKFPEFCDPFYTTTPPYTEADMLSSGSSSTSVSTIFNNATPPPLVDPPPPNLLNFSNNDNNLIQQPMTPSPHPPQPSTFPYPSEKKNSMAAMREMIFRIAVMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGANRQHNHNTVGAVGFPIGMSNSNNIVNYSSLLMKGCQPCQVFGGSTSKQLLS 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01050 259 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 59 238 IPR045843 GO:0003700|GO:0006355
Phco8g01050 259 CDD bHLH_AtIND_like 148 204 - -
Phco8g01050 259 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 147 196 IPR011598 GO:0046983
Phco8g01050 259 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 151 206 IPR036638 GO:0046983
Phco8g01050 259 Coils Coil 186 206 - -
Phco8g01050 259 Gene3D - 146 217 IPR036638 GO:0046983
Phco8g01050 259 SMART finulus 153 202 IPR011598 GO:0046983
Phco8g01050 259 FunFam BHLH transcription factor 150 215 - -
Phco8g01050 259 Pfam Helix-loop-helix DNA-binding domain 157 196 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01050 Phco-Chr8 11017996 11018775 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco8g01050 HLH 1.7e-06 No_clan