Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01044 ATGCTTCGCTTCTGCACCTCCAAAACTGCACAACAAAATGCACTACAAGATGGGATCTCCGCCTACAAACCTTCTTCTGCTGCCAACGTCTCTTCTTACTCGGTGGCACTTAATACTCACAATGAAACCGATGAGTACGACTGCCAGAGTGAGGAGGGTGAAGCGTTGGTAGATGAGGTTCCAATTCCACCGAAGTGTTTTCGTTCTGGGAGTTCATCCAAAAGAAGCAGAGCCGCGGAAGTTCATAACTTGTCTGAAAAGAGGAGGAGAAGTAAGATCAATGAGAAATTGAAGGCTTTGCAAAATCTAATTCCAAATTCTAACAAGACTGACAAGGCTTCAATGCTTGATGAAGCTCTTGAATACCTTAAACAGCTTCAACTGCAAGTACAGATGCTGTCAATGAGAAATAGGTTGAGTTTGCATCCCATGTTCTTTCCAGAAGGTTTGCAACCCTCGCAATTGTCTCAGATGAGAATAGATCCAATTGAAGAAAACAGGTCTATCCCTTCAAACACTACTGCTACTCTGCCTATCCAACAAGAAAACCCCATGCCCTATTCATCATCCACTCTGCCTAACAAACAAATTGTGGCAGATCAGCCATCCATGTCTGCAGCATCATATTTATTCAACTCTGAAACTTCTTTTAGGCTGGAATCTCATATTCCTGAAAATATAAGATCATTTCAACTCAGAAGTTTTTCTGAGATGTGCAGAGAAGACATATTGCAGCACCAACTTTTAAATGCAAACCATTCAGATACCAATCCATTAGGCTGTTCTCAAGGCACGTTGGCTACAGCATCAATTTCCTTTGATATGCAAAAATCTGCAGTTAAAGACAACAGCTCTTTGGAAAACTTCATCCCTGGAAGTGATCAATCCGGACTGGTGTTGAGAAATGGTGAGTCCAACATTATTCTGACCCAGCGGTTAATTGGGTAA 948 0.4188 MLRFCTSKTAQQNALQDGISAYKPSSAANVSSYSVALNTHNETDEYDCQSEEGEALVDEVPIPPKCFRSGSSSKRSRAAEVHNLSEKRRRSKINEKLKALQNLIPNSNKTDKASMLDEALEYLKQLQLQVQMLSMRNRLSLHPMFFPEGLQPSQLSQMRIDPIEENRSIPSNTTATLPIQQENPMPYSSSTLPNKQIVADQPSMSAASYLFNSETSFRLESHIPENIRSFQLRSFSEMCREDILQHQLLNANHSDTNPLGCSQGTLATASISFDMQKSAVKDNSSLENFIPGSDQSGLVLRNGESNIILTQRLIG 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01044 315 SMART finulus 83 132 IPR011598 GO:0046983
Phco8g01044 315 MobiDBLite consensus disorder prediction 66 89 - -
Phco8g01044 315 Pfam Helix-loop-helix DNA-binding domain 81 127 IPR011598 GO:0046983
Phco8g01044 315 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 74 138 IPR036638 GO:0046983
Phco8g01044 315 CDD bHLH_AtPIF_like 78 139 IPR047265 -
Phco8g01044 315 Gene3D - 72 138 IPR036638 GO:0046983
Phco8g01044 315 FunFam Basic helix-loop-helix transcription factor 72 135 - -
Phco8g01044 315 Coils Coil 116 136 - -
Phco8g01044 315 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 30 244 IPR031066 -
Phco8g01044 315 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 77 126 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01044 Phco-Chr8 10945380 10948304 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco8g01044 HLH 1.1e-13 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01044 8 10945380 10948304 Phco8g01044 8 10945380 10948304 ECH