Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01025 ATGAGGAAGAATATTGGTGGAAAGGAAAGAATGCACGGTGCAAGGGCAACGGCAACAGTCCTCCCTCTGTTGCTACTGATAATCAGGCTGGCCTCTTGCGGTGGCCCGACGGTGTCCTCCGACGCGGTGTGGTTGCTGTCGTTTAAACGGGAAGCGGACGAAGACAACAGGCTCCTCTACGCGCTGAACGAGCCCTACGACTACTGCGAGTGGGAGGGCGTGAAGTGCGCACAAGGGAGAGTAGTCCGGTTCGTGGTCCAGTCCATGGGCCTGCGCGGCCCATTCCCTCCGGACACCTTGACGGAACTGGACCAGCTCCGCGTGTTGAGCCTCCGCAACAACTCCCTCTTCGGGCCCATCCCCGATCTCTCCCCTCTCACCAACCTCAAGTCTCTCTTCCTCGACAACAACAACTTCTCCGGTTCCTTCCCTCCCTCTCTCCTCCTCCTCCACCGCATCCTCACTCTCTCCCTCTCCAACAACAATCTCTCCGGTTCGATCCCGCTTCGGCTCACTCTCCTCGACCGTCTCATTGCCCTCCGCCTCGACTCCAACAACTTCTCCGGCACGCTCCCTCCTCTCAATCAAACTGAGCTCAGACTCCTCAACGTCTCCAACAACAACCTCACTGGTCCTATTCCCGTCACCCCCACCCTCTCTAAACTCAACGCCGCCTCCTTTTCCGGAAATCCTGGCCTCTGCGGGGAGATTGTTCACAGAGAATGTGGCCCAGGCTCCCGCTTCTTCGGCCCCGCCACATCGTCCTCCACGGCGCCGTTGAGCCAGAGCGAACAGTCTCAGGGTATTTTGGTTGTGCCTGCTTCCACCAAAACAAAGCGGCATCAAAAGACTGGGCTGGTGGTTGTAGGTTTTGTTGTGGCGGTTGTTCTTGTGAGTGTTTTTGTTGTGTCCGTGGTTTCGCTGGTGAGAAGGAGGCAGATGGCTGCGGCGGGGAAAGCGGTGGTTGTGGAGGGGGATGGGGTGGAGGAGGGTGTGGAGGAGGAGAGGGAGGTGAAGGTGAGGAGGATGGAGGAGGCGCACAGGAGTGGGAAGCTGGTTTTCTGCTGCGGGGAGATGCAGCAGTATACGCTGGAGATGCTGATGCGGGCTTCCGCGGAGTTGCTTGGGAGGGGGAGCGTGGGGACGACGTACAAGGCGGTGCTGGATTCGCGGTTGATTGTGACGGTGAAGAGGTTGGATGGGGGGAAGAGTGGGGGGAGTGATGGGGTAGTGTTTGAGCGCCACATGGAGGCCGTGGGGAGGCTTCGCCACCCCAATTTGGTACCTTTGAGGGCTTATTTTCAGGCCAAGGGAGAGAGGCTTGTCATATATGATTATCAGCCCAATGGCAGCCTCTTCAACCTCGTTCACGGGTCAAGATCAGCGAGGGCGAAGCCTTTGCATTGGACTTCATGCTTGAAAATAGCCGAAGATGTGGCACAAGGACTTGCTTATATACATCAAGTTTCAACTCTAATTCATGGCAACCTCAAATCTTCTAACGTCCTTCTTGGGACGGACTTTGAAGCCTGTATTACGGACTATTGTTTGTCCTTCTTTGCAGATTCTTCGTTCACTGAAGATCCCGATTCTGCGGCTTATAGAGCACCCGAGGCTCGCAACTCTAGCCGCAGAGCCACTGCCAAGTCTGATGTGTATGCTTATGGAGTGCTTCTACTAGAGCTTTTGACGGCTAAACACCCTTCCCAACAACCTTTTCTTGCACCAGCGGATTTGCAAGATTGGGTGAGAGCAATGAGGGATGATGATGGCAGTGAAGACAACCGGCTAGAGATGCTCACGGAGGTTGCCAGTATTTGCAGTGCAACCTCTCCGGAGCAGAGGCCAGCTATGTGGCAAGTTCTGAAGATGATACAGGGAATAAAGGACAGCGTTTCGATGGAGGATACTTCATTTACTGGGCTCTCCTAG 1932 0.5543 MRKNIGGKERMHGARATATVLPLLLLIIRLASCGGPTVSSDAVWLLSFKREADEDNRLLYALNEPYDYCEWEGVKCAQGRVVRFVVQSMGLRGPFPPDTLTELDQLRVLSLRNNSLFGPIPDLSPLTNLKSLFLDNNNFSGSFPPSLLLLHRILTLSLSNNNLSGSIPLRLTLLDRLIALRLDSNNFSGTLPPLNQTELRLLNVSNNNLTGPIPVTPTLSKLNAASFSGNPGLCGEIVHRECGPGSRFFGPATSSSTAPLSQSEQSQGILVVPASTKTKRHQKTGLVVVGFVVAVVLVSVFVVSVVSLVRRRQMAAAGKAVVVEGDGVEEGVEEEREVKVRRMEEAHRSGKLVFCCGEMQQYTLEMLMRASAELLGRGSVGTTYKAVLDSRLIVTVKRLDGGKSGGSDGVVFERHMEAVGRLRHPNLVPLRAYFQAKGERLVIYDYQPNGSLFNLVHGSRSARAKPLHWTSCLKIAEDVAQGLAYIHQVSTLIHGNLKSSNVLLGTDFEACITDYCLSFFADSSFTEDPDSAAYRAPEARNSSRRATAKSDVYAYGVLLLELLTAKHPSQQPFLAPADLQDWVRAMRDDDGSEDNRLEMLTEVASICSATSPEQRPAMWQVLKMIQGIKDSVSMEDTSFTGLS 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01025 643 Pfam Protein kinase domain 372 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g01025 643 Gene3D Transferase(Phosphotransferase) domain 1 448 640 - -
Phco8g01025 643 Gene3D Phosphorylase Kinase; domain 1 333 446 - -
Phco8g01025 643 Gene3D Ribonuclease Inhibitor 38 195 IPR032675 -
Phco8g01025 643 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 24 631 IPR046959 -
Phco8g01025 643 FunFam Probable inactive receptor kinase At5g67200 40 150 - -
Phco8g01025 643 FunFam Leucine-rich repeat receptor-like protein kinase 152 244 - -
Phco8g01025 643 ProSiteProfiles Leucine-rich repeat profile. 105 127 IPR001611 GO:0005515
Phco8g01025 643 Gene3D Ribonuclease Inhibitor 196 245 IPR032675 -
Phco8g01025 643 SUPERFAMILY Protein kinase-like (PK-like) 373 630 IPR011009 -
Phco8g01025 643 ProSiteProfiles Protein kinase domain profile. 369 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g01025 643 SUPERFAMILY L domain-like 37 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01025 Phco-Chr8 10672870 10675741 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Phco8g01025 Pkinase 1.4e-30 CL0016