Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01021 ATGGCCGTGGAGCTCATGACGGGGTACAGAACCACCACTTTCACAACCAAAGCCGAGGAAAATGCGGTCCAGGAAGCCGCCTCCGGTTTGGAGAGCGTGGAGAAGCTAATCAGACTCCTCTCTCAGACCCCCCAACAATACAACTCCTCCAATCAAATCGCCATCGACTGCAAGGCCGTCGCTGACCTCGCAGTTTCCAAGTTCAAAAACGTCATTTCGCTCCTAGGCCCAGGCCCAGGTCCAACCCCAACCCCAACCGGCCACGCCCGCTTCCGAAGAGCTCCTCTCCCTCCTCCTCCTCCTCCGCCTCCTTCTTCCACACAACCCTCCCAACCTTCCGTCTTCCACGCCACCCCTCTGCACCAAATCCCCAAAACAGACAACACCCTCAACGACCCCTCTTCCAAAACCATTTATTTCTCCTACCCCACCCCCGCCACTTCCTTCATCTCCTCCCTCACCGCCGACGTCCACACCAAACAACCCTCTTCCTCCTCGCCGCCCCCGCCTGCGCCGGGGGCTTTCCACATCACCTCTCTCTCTCACGTCTCGTCCGCGGGGAAGCCTCCCCTCTCCTCCTCCTCCTCTTTCAAGAGGAAGTGCAGCTCTGAGAACTTGCCTTCTGGAAAGTGCGGTAGCTCCTCTAGCCGCTGTCATTGCTCCAAAAAGAGTAGGAAAATGAGGTTGAAGAGGGTGGTGAGGGTACCGGCTATAAGCTTGAAGATGGCTGATATTCCACCAGATGATTATTCTTGGAGGAAGTATGGTCAGAAACCAATCAAAGGATCCCCTCATCCAAGGGGTTACTACAAGTGCAGTAGCGTTAGAGGGTGTCCAGCGCGCAAGCATGTGGAGAGAGCTTTGGATGATCCAGCTATGCTGGTCGTAACCTATGAAGGGGAGCACAATCACGCTCTCTCTGCGGCTGATGCTACTAACCTTATTCTTGAATCATCTTGA 960 0.5531 MAVELMTGYRTTTFTTKAEENAVQEAASGLESVEKLIRLLSQTPQQYNSSNQIAIDCKAVADLAVSKFKNVISLLGPGPGPTPTPTGHARFRRAPLPPPPPPPPSSTQPSQPSVFHATPLHQIPKTDNTLNDPSSKTIYFSYPTPATSFISSLTADVHTKQPSSSSPPPPAPGAFHITSLSHVSSAGKPPLSSSSSFKRKCSSENLPSGKCGSSSSRCHCSKKSRKMRLKRVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPAMLVVTYEGEHNHALSAADATNLILESS 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01021 319 FunFam WRKY transcription factor 65 230 307 - -
Phco8g01021 319 SMART WRKY_cls 246 306 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco8g01021 319 MobiDBLite consensus disorder prediction 158 177 - -
Phco8g01021 319 ProSiteProfiles WRKY domain profile. 241 307 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco8g01021 319 MobiDBLite consensus disorder prediction 92 109 - -
Phco8g01021 319 Pfam WRKY DNA -binding domain 248 304 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco8g01021 319 Gene3D WRKY domain 233 307 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco8g01021 319 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 23 312 IPR044810 GO:0003700
Phco8g01021 319 Pfam Plant zinc cluster domain 198 244 IPR018872 -
Phco8g01021 319 MobiDBLite consensus disorder prediction 74 115 - -
Phco8g01021 319 SUPERFAMILY WRKY DNA-binding domain 243 305 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01021 Phco-Chr8 10640985 10642253 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Phco8g01021 WRKY 4.3e-26 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01021 8 10640985 10642253 Phco8g01021 8 10640985 10642253 ECH
Phco8g01021 8 10640985 10642253 Phco4g01141 4 9371419 9372757 PCT