Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01012 ATGTGTGATCTGAAACCGGATCATCAATGTTTTAAGTCTGAAACGAATCAGCTGTTCTGTACTACGCTGCAAGCCCGAAAGATTGAAGAATTATCTGTGAGCAATGTTGATGAAGGTTATGGAATTTGGTTGATGGAGAATTATAAGAAAAAACAAGACTGTTCCCGCGGTGATTTGATATGCAATGTGGGATTACTGTGTAAAGTCATGACTCTCTTCTGTGAAACTCTTATAATTTCACTGCTTCTTCTCCTCACTGTTAACCACTGTTGTGGCCTCACTAGAGACGGCGTTCTGTTGCTTTCTTTCAAGTACGCTGTGTTCAACGACCCACTTTACGTCCTCGCAAACTGGAACTACGCTGACGAGACACCGTGTTCGTGGAACGGCGTTTCCTGTTCCACTGTAGCAGCGACGAACAATACCGAGTACCGCGTCACATCGTTGTCGCTTCCGAATTCTCAGCTTTTCGGCTCAATTCCCTCCGATCTGGGATCCATTGAACACCTTCAAGTTCTAGACCTTTCCAACAACTCCCTCAACGGCACTCTTCCTTCTTCGCTGTCCCAAGCCTCCGAGCTTAGGTTCCTCAACCTGTCTAACAATTTAATAACAGGGGAGGTTCCGGACTCCATACCGCAGCTTCAGAATCTCCAATACCTAAACCTCTCCGACAATGCTTTGGCGGGAAAACTGCCTCACGATTTGTCCAACATGCACAACCTAACTCTGGCTTCCTTCAAGAACAATTACTTGTTCGGTTTTATTCCCAGCGGGTTGAGAACATTGCAGGTTTTGGATCTGTCTTCAAACCTGTTCAACGGGACTCTTCCCGCGGATTTCGGCGGAGACGCCATGCGTTACCTAAACATCTCCTACAACAGATTTTTCGGGGAAATCCCGATGGAGTTCGCAGCAAACATTCCGGGGAACGCCACCATCGATCTCTCGTTCAACAATTTCACCGGACAAGTTCCTCACTCCACTGTGTTTTTGAATCAGAACTGGGAGTCGTTCTCCGGTAACGTTAACCTGTGTGGTGAAAAAACGAAGAATGTGTGTCCAGTTCCTTCTTCGTCGTCCTCTAAACCGAAAGTTTCTGCACCTATATCTCCTCCTGCAATCGCGGCAATCCCGCGGACGTTTGATTCTTCGGCGGCGCCGAGGGGGAAAAAAGAGAGTGGTCTGAAACGAGGAACGGTTATAGGAATCGTTTTGGGAGACGTAATTGGGATTGCGATCCTGGGCATGATATTCGTGCAGGTGTACCGGTTGAAGAAAAAGAAGGAGGAGGCGGTTGCGAAGAGTGGGAGTGAAAGTTCGTGGGAGTGTAGAAGGTTAATGAGGTGGTGGTGTTTGAGTAAAAGAGCGGAAGAGGAAGAGTGTTCGGAGACAGGAAGCAGCTGTGATAGTGAGGTGGAGGAGCAGAAGCAGAAGAGTCCGCAACAGGAGGAGAAAACGGGAAGTCTTGTGATTGTGGATGGTGAACGAGAGCTTGAACTGGAAACGCTGCTGAAGGCTTCTGTGTACATATTGGGTGCCACGGGGTCAAGCATAATGTACAAGGCTGTCTTGGATGATGGTATGTCCTTGGCGGTTCGGAGAATTGGGGAGAGCGGCGTGGAGCGTTTCAAGGATTTCCAGAACCAGGTTCGACTTATTGCTAAACTGGTTCACCCTAATCTGGTTCGCGTTCGAGGCTTCTACTGGGGGCACCATGAGAAGCTCATCATCTATGATTTCGTTCCAAACGGATGCCTTGCCAATGTTCGTTACAGGAAGGTGGGCTCCTCGCCGACTCATTTATCGTGGGAGATCAGGCTGAAGATAGCGAAAGGGGTGGCACGTGGGCTGACTTACCTCCACGAGAAGAAACACGTGCATGGAAACTTGAAGCCTAGCAATATTCTGCTAGGCAATGACATGGAGCCCAAAATTGGAGACTTTGGGCTTGAGAGGATAGTGACGGGTGACACCAGTTATAAGGCTGGCGGATCGGCGCGTATTTTTGGGAGCAAGAGATCCACGGCCTCGCGTGACAGTTTCCAAGACACTACGTATGGGCCCAGCCCCAGCCCCAGCCCCAGCCCCAGCCCTAGCTCCTTGATGGGCCTGTCTCCTTACCATGCTCCCGAGTGTCTCAGGAACCTGAAGCCTCACCCCAAGTGGGACGTGTACTCTTTTGGGGTCATGTTTCTTGAGCTGCTAACGGGGAAGATTGTGGTTTTGGATGATATGGGCCAAGGGCCTGGGCTTTTGATGGAGGATAAGAACCGGGCTTTGCGTATGGTTGATATGGCTATCAGGGCCGACATGGAGGGTAGAGAGGAGGCCCTCTTGGCCTACTTCAAGCTAGGGTATAGTTGTGTGTCCAGCGTTCCACTGAAAAGGCCCCCAATGAAAGAGGTGCTACAACTTCTTGAAAAGATCTCATCTTCCTCATCTTCCTTCTCATATTATTATAGCGTCTGA 2472 0.4951 MCDLKPDHQCFKSETNQLFCTTLQARKIEELSVSNVDEGYGIWLMENYKKKQDCSRGDLICNVGLLCKVMTLFCETLIISLLLLLTVNHCCGLTRDGVLLLSFKYAVFNDPLYVLANWNYADETPCSWNGVSCSTVAATNNTEYRVTSLSLPNSQLFGSIPSDLGSIEHLQVLDLSNNSLNGTLPSSLSQASELRFLNLSNNLITGEVPDSIPQLQNLQYLNLSDNALAGKLPHDLSNMHNLTLASFKNNYLFGFIPSGLRTLQVLDLSSNLFNGTLPADFGGDAMRYLNISYNRFFGEIPMEFAANIPGNATIDLSFNNFTGQVPHSTVFLNQNWESFSGNVNLCGEKTKNVCPVPSSSSSKPKVSAPISPPAIAAIPRTFDSSAAPRGKKESGLKRGTVIGIVLGDVIGIAILGMIFVQVYRLKKKKEEAVAKSGSESSWECRRLMRWWCLSKRAEEEECSETGSSCDSEVEEQKQKSPQQEEKTGSLVIVDGERELELETLLKASVYILGATGSSIMYKAVLDDGMSLAVRRIGESGVERFKDFQNQVRLIAKLVHPNLVRVRGFYWGHHEKLIIYDFVPNGCLANVRYRKVGSSPTHLSWEIRLKIAKGVARGLTYLHEKKHVHGNLKPSNILLGNDMEPKIGDFGLERIVTGDTSYKAGGSARIFGSKRSTASRDSFQDTTYGPSPSPSPSPSPSSLMGLSPYHAPECLRNLKPHPKWDVYSFGVMFLELLTGKIVVLDDMGQGPGLLMEDKNRALRMVDMAIRADMEGREEALLAYFKLGYSCVSSVPLKRPPMKEVLQLLEKISSSSSSFSYYYSV 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01012 823 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 93 261 - -
Phco8g01012 823 Pfam Leucine Rich Repeat 169 189 IPR001611 GO:0005515
Phco8g01012 823 Pfam Leucine Rich Repeat 217 238 IPR001611 GO:0005515
Phco8g01012 823 FunFam Leucine-rich repeat receptor-like protein kinase 262 356 - -
Phco8g01012 823 SMART LRR_typ_2 167 191 IPR003591 -
Phco8g01012 823 SMART LRR_typ_2 260 283 IPR003591 -
Phco8g01012 823 SMART LRR_typ_2 215 239 IPR003591 -
Phco8g01012 823 Gene3D Transferase(Phosphotransferase) domain 1 583 819 - -
Phco8g01012 823 ProSiteProfiles Protein kinase domain profile. 506 810 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g01012 823 PRINTS Leucine-rich repeat signature 215 228 - -
Phco8g01012 823 PRINTS Leucine-rich repeat signature 170 183 - -
Phco8g01012 823 SUPERFAMILY L domain-like 95 347 - -
Phco8g01012 823 Gene3D Ribonuclease Inhibitor 94 259 IPR032675 -
Phco8g01012 823 FunFam Os07g0541700 protein 587 672 - -
Phco8g01012 823 Gene3D Ribonuclease Inhibitor 260 356 IPR032675 -
Phco8g01012 823 Pfam Protein kinase domain 512 805 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g01012 823 Pfam Leucine rich repeat N-terminal domain 96 134 IPR013210 -
Phco8g01012 823 Gene3D Phosphorylase Kinase; domain 1 470 581 - -
Phco8g01012 823 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 248 814 IPR046959 -
Phco8g01012 823 MobiDBLite consensus disorder prediction 463 487 - -
Phco8g01012 823 MobiDBLite consensus disorder prediction 674 704 - -
Phco8g01012 823 SUPERFAMILY Protein kinase-like (PK-like) 511 811 IPR011009 -
Phco8g01012 823 MobiDBLite consensus disorder prediction 674 689 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01012 Phco-Chr8 10559495 10563198 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Phco8g01012 Pkinase 2.6e-29 CL0016