Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco8g01001 | ATGCAAATATCACACCCCAAACTAAGCCCAGATCACCACCTTTCCATGGAGATTCCTAAGCTCCACATAATTCAACACTCTCGCTGTATAGCACTTCTTTTCCTTCTTCAGTTCTCATCACTGCACTTCCCCTCACTCGGCGGCTACAACGTCCCAGATAAGTACTTTATCAATTGTGGGTCAGACAACAGTGTTAACGAAAGTGGCAAGGTTTACGTTGCTGAGTCAACACTTGAAGCCAGTTTTAGCAGCAGTAACACAGAAAAGAATCAGTCATCGGTGTCATCTCCTCTTTACCAAACAGCAAGGATTTTTCGAAGGGAATCTTGGTACAAGTTCAACATCGATTTAAATGGCACCTACCTGCTACGCCTCCATTTCTTCCCTTTCTCTTCGCCCGGTAATCTTTCCTCGGCCAGGTTCAACGTTTCAGTCCCTCGTTTCTGGTTGTTGGAAAATTTTGATGGTACAAATGATACCAATAACAACTCTGCTTTAGTTAAAGAGTTTTTCATGGAGATCAGAACCCCCACCTTCAAAATAACTTTCAGACCTCTGGAGTCATCGTTTGCGTTTGTGAATGCCATAGAACTGTTCGTACTACCCCTCCATCTGATATCTGACAAGGTGTCGTTTTTCAAACCTATTGGGGGTGCATCTTCTTATAGCGGAGGTTTGTACTCTCGGGTGTTGGAGACCAAACATAGGCTTAATGTTGGTGGTCAACCTACCAAAGATATCTTATTGAGAAACTGGATTCCAGATGATATTTATCTAATGTATAAAGAAAACGCCAAGAATCGTTCCCCTTACCAGGGTATCGAGTACCATGTAGATGATGACTCCGATGGTCCAAACGCAACTAGATATACTGCGCCAATTGAGGTGTACGGAACTGCTAAGGAGAGTAACCTCTCTGCCAATGCCACAAACTTTGGACTTTTCAACATAACATGGGCTCTTCCGGTGGACAACAAAACCGATCATTTCCTTCGGCTTCACTTCTGTGACTATATTAGTCAACAATTTAACCTTACATACTTCGAACTTTCAATTTATGACGCCTTTGTCATGGAGGTAAATAATGACGAAAACGTGTCTAACGTGTTGCCTGCCCCTTATTATTACGATTTCGTGGTGAACTCTGATGACTCTGGACATATTAAGGTCAGCCTAACACCTGATGGAACCGCTTTAAAACCAAGTGCATTTTTAAACGGGCTAGAAATAATGAAAGTGATTGAATCATCAAATTCTGTCCCCCGTGACATGGAAGAACCCGATTCCAATCATCATCCTCTTCCTGTGGTTCTGGGTCCAGTTATTGGTGGTTTAGTCTTGGCTTTTGTTGTGGTGCTACTTGGCTTTCTTTGGCGTTTTAAAATGAGCAAGGAAAAGCCCGTTGAGAATTCGGACTGGTTGCCGGTCCTCGTTAATGCTGGAGGAAGTTCTCACAGCAGATTGACTGATATAACCAGTCACGGCTCTCCCCTTCCCAACATAAACCTAGGGCTCAAAATTCCCTTGATTGATCTTCAACTTGCAACAAAGAATTTCCACGAAAGTCAGCTGATTGGCAAGGGTGGTTTTGGCAACGTCTACAAGGGAGTCCTCAAGAATGGCATGACAGTGGCTGTGAAAAGAAGCCAGCCAGGGTCAGGTCAAGGCCTTCCAGAATTTCAGACAGAGATTATGGTTTTGTCCAAGATTCGCCACAGGCACCTTGTTTCCTTAATTGGGTATTGTGATGAGAGGTTCGAGATGATTCTGGTCTATGAATACATGGAAAAAGGAACCCTAAGGGAGCATTTGTATAACACAAAGTTGCCAAGCTTGTCCTGGAAGGTGAGGCTTCAAATTTGCATTGATTCTGCCAGGGGTCTTCATTACCTTCACAAAGGAGCAGCTGGGGGAATCATTCACCGTGATGTGAAGTCCACAAACATATTGCTTGATGAGAACCATGTCGCTAAAGTTGCTGATTTTGGTGTTTCAAGGTCAGGTCCTCTTGGTACTGAATCTTATGTCACCACTGGTGTTAAAGGCACTTTTGGGTATCTTGATCCTGAGTATTTCGGGTCGCAAAAGCTGACAGAAAAATCTGATGTCTACTCATTTGGGGTAGTTCTTTTGGAAGTTTTATGTGCAAGAGCAGCGATTGACCCATCTCTTCCAAGAGATCAGATAAACTTGGGGGAATGGGGATTGCTTTGCAAAAACAAGGGGATACTCCAAGAGGTCATCGATCCTTCCATCAAGGACCAAATTGATCAAAACTCACTCAGAAAATTTAGTGAGACGATAGAAAAATGCTTGCAAGAAAATGGTTCTGATAGGCCAACCATGGGTGATGTGTTGTGGAACTTGGAGTATGCGCTGCAGCTTCAGAGAGGTGCAAATTTAATACAGAGAGAGCCGTATGAGGATAGTTCTAGTAGTGTTTCTGCATCACTTCAACTGCCCAATGTTCGGCGTCTTCCTTCACTCTCCACACTGAGTGAAGCCGATGATACCATTGTGAGGCATGATGAATCGGATAGTGCTGTGGATTACGTTTTCTCCCAGTTGAAGATTGAGGATGCCAGATAG | 2589 | 0.4365 | MQISHPKLSPDHHLSMEIPKLHIIQHSRCIALLFLLQFSSLHFPSLGGYNVPDKYFINCGSDNSVNESGKVYVAESTLEASFSSSNTEKNQSSVSSPLYQTARIFRRESWYKFNIDLNGTYLLRLHFFPFSSPGNLSSARFNVSVPRFWLLENFDGTNDTNNNSALVKEFFMEIRTPTFKITFRPLESSFAFVNAIELFVLPLHLISDKVSFFKPIGGASSYSGGLYSRVLETKHRLNVGGQPTKDILLRNWIPDDIYLMYKENAKNRSPYQGIEYHVDDDSDGPNATRYTAPIEVYGTAKESNLSANATNFGLFNITWALPVDNKTDHFLRLHFCDYISQQFNLTYFELSIYDAFVMEVNNDENVSNVLPAPYYYDFVVNSDDSGHIKVSLTPDGTALKPSAFLNGLEIMKVIESSNSVPRDMEEPDSNHHPLPVVLGPVIGGLVLAFVVVLLGFLWRFKMSKEKPVENSDWLPVLVNAGGSSHSRLTDITSHGSPLPNINLGLKIPLIDLQLATKNFHESQLIGKGGFGNVYKGVLKNGMTVAVKRSQPGSGQGLPEFQTEIMVLSKIRHRHLVSLIGYCDERFEMILVYEYMEKGTLREHLYNTKLPSLSWKVRLQICIDSARGLHYLHKGAAGGIIHRDVKSTNILLDENHVAKVADFGVSRSGPLGTESYVTTGVKGTFGYLDPEYFGSQKLTEKSDVYSFGVVLLEVLCARAAIDPSLPRDQINLGEWGLLCKNKGILQEVIDPSIKDQIDQNSLRKFSETIEKCLQENGSDRPTMGDVLWNLEYALQLQRGANLIQREPYEDSSSSVSASLQLPNVRRLPSLSTLSEADDTIVRHDESDSAVDYVFSQLKIEDAR | 862 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco8g01001 | 862 | CDD | STKc_IRAK | 525 | 790 | - | - | |
| Phco8g01001 | 862 | FunFam | Putative receptor-like protein kinase | 229 | 414 | - | - | |
| Phco8g01001 | 862 | Pfam | Protein tyrosine and serine/threonine kinase | 522 | 786 | IPR001245 | GO:0004672|GO:0006468 | |
| Phco8g01001 | 862 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 639 | 651 | IPR008271 | GO:0004672|GO:0006468 | |
| Phco8g01001 | 862 | SUPERFAMILY | Protein kinase-like (PK-like) | 496 | 790 | IPR011009 | - | |
| Phco8g01001 | 862 | Gene3D | - | 54 | 200 | - | - | |
| Phco8g01001 | 862 | Gene3D | - | 231 | 414 | - | - | |
| Phco8g01001 | 862 | FunFam | Receptor-like protein kinase FERONIA | 595 | 812 | - | - | |
| Phco8g01001 | 862 | FunFam | Putative receptor-like protein kinase | 54 | 202 | - | - | |
| Phco8g01001 | 862 | ProSiteProfiles | Protein kinase domain profile. | 519 | 792 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Phco8g01001 | 862 | SMART | serkin_6 | 519 | 792 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Phco8g01001 | 862 | Gene3D | Phosphorylase Kinase; domain 1 | 486 | 594 | - | - | |
| Phco8g01001 | 862 | FunFam | receptor-like protein kinase FERONIA | 484 | 594 | - | - | |
| Phco8g01001 | 862 | ProSitePatterns | Protein kinases ATP-binding region signature. | 525 | 547 | IPR017441 | GO:0005524 | |
| Phco8g01001 | 862 | Pfam | Malectin-like domain | 57 | 413 | IPR024788 | - | |
| Phco8g01001 | 862 | Gene3D | Transferase(Phosphotransferase) domain 1 | 595 | 810 | - | - | |
| Phco8g01001 | 862 | PANTHER | OS07G0166700 PROTEIN | 506 | 796 | IPR045272 | GO:0004714|GO:0006468 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco8g01001 | Phco-Chr8 | 10420761 | 10423349 | Proximal |
Transcription factors information