Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00978 ATGGAGATGAGGATGCTTTATATGGATGTGTCTGGCTATCTGTTCTTCTCCAATCACCTTAGCCAGACTTTGTTGGTCAATGATCGTCATGCTTCAATTTCATCTCATGGTTTGAGAAACAGTGGTCTTTTTCAAAATTTCCTGTTTGGACAAAACTCTGCTGGTTGCTTTGAGAATGTAAAAAGTATGTGTAATTATCCCTTCACACGCATTAAATATGCGCACGAACCACCAGCAATACTTCTCCGCTTCTTGCTAGTGTGCACCCTTGTCGCCTTGCGTGCGCCGGTTGCGCAACCCCCTAACGTGCGCATCCCCACCCACCTCATCGAAACTAAGACCACCACAATCCTTCATCAGCGCCACAGAACCCAGATCTCGGGTTCCAATCCCCAACCCATGTCGAAGGCGCGTGTCTACACCGATGTCAACGTTATTCGCCCCAAAGAGTACTGGGATTACGAATCTCTCACCGTTCAATGGGGCGATCAGGATGATTATGAGGTTGTGCGAAAAGTGGGAAGGGGGAAGTATAGTGAGGTTTTTGAAGGCATAAATGTTAATAGCAACGACCGCTGTATAATCAAGATTCTCAAGCCTGTTAAGAAAAAAAAGATTAAAAGAGAGATAAAAATACTTCAGAACCTTTGTGGGGGCCCAAATATTGTCAAGCTTCTTGATATTGTCAGAGATCAACACTCTAAAACTCCTAGCTTAATATTTGAGTATGTCAACAGTACAGATTTTAAAGTTTTGTATCCAACCTTGACTGACTATGACATACGCTATTATATATACGAGCTTCTCAAGGCCTTAGATTACTGTCATTCTCAAGGCATAATGCATAGAGATGTCAAGCCTCATAATGTCATGATAGATCATGAATTACGGAAACTTCGCTTGATAGATTGGGGTCTTGCTGAATTTTATCACCCTGGAAAGGAATACAATGTTCGTGTGGCTTCAAGATACTTTAAGGGCCCTGAACTTCTAGTTGATTTGCAAGATTATGACTACTCATTAGACATGTGGAGTCTTGGCTGCATGTTTGCTGGAATGATATTTCGCAAGGAGCCTTTCTTTTATGGTCACGACAACCATGATCAACTTGTCAAAATAGCTAAGGTGCTTGGGACTGATGAACTGAATGCATATTTGAACAAGTATCATCTGGAGCTTGATCCTCAACTCGATGCACTAGTGGGAAGGCACAGTCGCAAACCTTGGTCTAAATTTATTAATGCTGATAATCAACATCTCGTGTCTCCTGAGGCAATTGATTTTCTTGATAAGCTCCTTCGATACGATCACCAAGACAGGCTTACAGCAAGAGAAGCAATGGCACATCCATATTTCTCTCAAGTAAGGGCAGCTGAAAGCAGCAGAATGAGGACACAATAA 1401 0.4226 MEMRMLYMDVSGYLFFSNHLSQTLLVNDRHASISSHGLRNSGLFQNFLFGQNSAGCFENVKSMCNYPFTRIKYAHEPPAILLRFLLVCTLVALRAPVAQPPNVRIPTHLIETKTTTILHQRHRTQISGSNPQPMSKARVYTDVNVIRPKEYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNSNDRCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDELNAYLNKYHLELDPQLDALVGRHSRKPWSKFINADNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFSQVRAAESSRMRTQ 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00978 466 ProSiteProfiles Protein kinase domain profile. 167 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g00978 466 FunFam Casein kinase II subunit alpha 153 243 - -
Phco8g00978 466 Gene3D Transferase(Phosphotransferase) domain 1 244 453 - -
Phco8g00978 466 SMART serkin_6 167 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g00978 466 FunFam Casein kinase II subunit alpha 244 455 - -
Phco8g00978 466 PANTHER CASEIN KINASE II SUBUNIT ALPHA 110 462 IPR045216 GO:0004674|GO:0006468
Phco8g00978 466 Gene3D Phosphorylase Kinase; domain 1 158 216 - -
Phco8g00978 466 Gene3D Phosphorylase Kinase; domain 1 220 243 - -
Phco8g00978 466 ProSitePatterns Protein kinases ATP-binding region signature. 173 196 IPR017441 GO:0005524
Phco8g00978 466 SUPERFAMILY Protein kinase-like (PK-like) 134 456 IPR011009 -
Phco8g00978 466 Pfam Protein kinase domain 167 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g00978 466 CDD STKc_CK2_alpha 148 452 IPR045216 GO:0004674|GO:0006468
Phco8g00978 466 ProSitePatterns Serine/Threonine protein kinases active-site signature. 280 292 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00978 Phco-Chr8 10177522 10184781 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Phco8g00978 Pkinase 2.6e-65 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00978 8 10177522 10184781 Phco8g00978 8 10177522 10184781 ECH
Phco4g01178 4 9742615 9747939 Phco8g00978 8 10177522 10184781 PCT