Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00966 ATGAAGAGCAGCAGTAAAACGGAGAATGGCGTGATGGACAGTATGACAAGTACTGGTTTGGCGGATATTGTGAGGGGAGAAGAGTTAGCGTTTGGTTTTTCTCCAACCATGCTGGTTGTGACTGTGAGAGAGTTCGACCCAAATAAAGACACAGAGAGAGTAGAAGCGGTTGAAAGAATATGTGAGGTTGGACCCAGTGGGAAGCTTTCTCTCTTCACCGACCTCCACGGTGACCCTATTTGCAGGGTCCGCAACTCACCTACTTTCCTCATGCTGGTAGCCGAAATTGGGCAAGAGACAGTGGGAATGATAAGGGGTTGCATCAAAACCGTTACATGCGGAAAGAAGCTCCACAGGCATGGAAAGAATAGCACCGAACCTGGTTCCAAACAAGTCCCTATCTACACCAAACTGGCCTACATATTAGGCCTCCGGGTTTCTCCACACCACAGGAGAATGGGAATAGCGTTGAAGCTGGTGCAGAGAGTAGAGGAGTGGTTCAGAGAGAATGGAGCGGAATACGCTTACATGGCAACAGAAAAGGACAACGTGGCATCCGTTAAGCTCTTCACCGACAAATGCGGCTACTCAAAGTTTCGTAGCCCCTGCATCCTTGTCAACCCCGTTTTCGCTCACCCACTCAGACCCTCCTCCAACTTCTCCATAATACAACTTGCTTCAAACGACGCCGAGTTGCTCTACCGCACCAAGTTCGCCACAACGGAGTTCTTCCCGCGCGACGTCGACTCCATCCTCAATAACCACCTCAATCTCGGCACCTTCCTCGCCGTTCCTCGCGGCTCATACTCTCCCGACACGTGGCCCGGTTTGTCCCGCTTTCTCGCGGACCCACCCTCGTCCTGGGCCCTCCTCAGCGTGTGGAACTGCAAGGACGTGTTCACGCTCCAGGTGAGGGGCGCGTCGCGCGTGAAGAAGGCGCTAGCCAAGACCACTCGCCTCCTCGACCGCGCCTTCCCCTGGCTGCGCCTTCCCTCCATCCCCGACTTCTTCCAGCCATTTGGGTTTCACTTTTTGTACGGGCTCGGAGGGGAGGGCCCACAGGCCCAGAAGATGGTGAGGGCTTTGTGCGCCTTCGCTCATAACCTCGCCAAGGATCGTGGTTGCCAGGTGGTGGCCACTGAGGTTTCAGGTCTGGAACCCCTACGCTGCGGCATCCCACACTGGAAGATGCTGTCTTGCGAAGAGGATTTGTGGTGCATCAAGAGACTCGGGGAAGATTACAGCGATGGTTCTGTTGGTGATTGGACCAAATCCCCTCCCGGATTCTCAATTTTTGTTGATCCCAGAGAGATCTAA 1317 0.5414 MKSSSKTENGVMDSMTSTGLADIVRGEELAFGFSPTMLVVTVREFDPNKDTERVEAVERICEVGPSGKLSLFTDLHGDPICRVRNSPTFLMLVAEIGQETVGMIRGCIKTVTCGKKLHRHGKNSTEPGSKQVPIYTKLAYILGLRVSPHHRRMGIALKLVQRVEEWFRENGAEYAYMATEKDNVASVKLFTDKCGYSKFRSPCILVNPVFAHPLRPSSNFSIIQLASNDAELLYRTKFATTEFFPRDVDSILNNHLNLGTFLAVPRGSYSPDTWPGLSRFLADPPSSWALLSVWNCKDVFTLQVRGASRVKKALAKTTRLLDRAFPWLRLPSIPDFFQPFGFHFLYGLGGEGPQAQKMVRALCAFAHNLAKDRGCQVVATEVSGLEPLRCGIPHWKMLSCEEDLWCIKRLGEDYSDGSVGDWTKSPPGFSIFVDPREI 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00966 438 CDD NAT_SF 91 176 - -
Phco8g00966 438 Pfam Acetyltransferase (GNAT) family 85 196 IPR000182 GO:0016747
Phco8g00966 438 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 73 197 IPR016181 -
Phco8g00966 438 Gene3D - 72 201 - -
Phco8g00966 438 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 40 215 IPR000182 GO:0016747
Phco8g00966 438 FunFam Probable N-acetyltransferase HLS1-like 49 203 - -
Phco8g00966 438 PANTHER ACYL-COA N-ACYLTRANSFERASES (NAT) SUPERFAMILY PROTEIN 39 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00966 Phco-Chr8 10015016 10017590 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Phco8g00966 Acetyltransf_1 1.5e-16 CL0257
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00966 8 10015016 10017590 Phco8g00966 8 10015016 10017590 ECH
Phco4g01186 4 9888708 9890178 Phco8g00966 8 10015016 10017590 PCT