Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00954 ATGGATACCTTGTTTAGGCTAGTAAGTTTTCAACAGCAACAACACCATCAACCACAACCCGATCCATCCCTCAACTCCACCACCAGCAGAACTTCTAGCAGTTCCAGATCCTCCCGACAAAACTACTACCATTACTCCAACCAAGAAGACGAAGAATGCTTCAACTTTTACATGGATGAAGAAGACTTATCCTCGTCTTCTTCCAAACACTACTACCCCTACCACAACGTATCCACCACCACCACTACCACCACCACAACCAACACCTTCAGCACCACCACCAACACCGATTACTCCTACTCCTTCTCCCCCACCCCTCCCCTCCCCGACTTCAACTTCCAATTCTCCCCCAACTGGTCCCACAACCTCCTCCTCGAAACAGCACGCGCCTTCGCCGACAACAATAGCACGCGCCTCCACCACCTCCTCTGGATGCTCAACGAACTTAGCTCCCCATACGGCGACACCGATCAAAAGCTCGCCGCCTATTTCCTCCAAGCCCTGTTCAGCCGCGTCACTGACGCTGGAGACCGAACCTACCGAACCTTAGCCTCGGCATCGGAGAAAACATGCTCCTTCGAGTCAACGAGGAAGACGGTGTTGAAATTCCAAGAAGTCAGCCCCTGGACAACTTTCGGACACGTGGCGTCCAATGGCGCCATCTTAGAAGCCTTAGAAGGAAACCCCAAATTGCACATACTTGACATCAGCAACACCTATTGCACCCAATGGCCAACCCTTCTAGAAGCATTGGCAACTCGAACAGACGAAACTCCGCACCTCAGGTTAACCACCGTCGTTACCGGGAGAACCGGTAACTCCGTGCAGCGCGTCATGAAGGAAATCGGAACAAGAATGGAGAAGTTCGCGCGACTCATGGGCGTTCCGTTCAAGTTCAACGTCGTTCATCACGCCGGCGATCTCTCCGAACTCAATTTCTCTGAACTCAACCTCAAAGACGACGAGGCCCTGGCCATCAACTGCGTGAACGCGCTGCATTCGGTTTCCGCGGCGGGGAACAGCCGCGACGCGTTGATATCGTCGTTGCAAGGGTTGCAGCCGAGGATCGTGACGGTGGTGGAGGAGGAGGCGGATTTGGACGTGGGAATCGAGGGGTACGAGTTCGTGAGAGGTTTCGAGGAGTGTTTGAGGTGGTTTAGGGTTTACTTCGAGGCGCTGGACGAGAGTTTCGTGAAGACGTGCAACGAGAGGCTGATGCTCGAGCGCGCGGCAGGGAGGGCAGTGGTGGACCTGGTGGCGTGCTCGCCAGCGGATTCCTTTGAGCGTCGGGAGACGGCGGCGCGGTGGGGAACGCGGCTGCATGGCGGAGGGCTAAGCGCGGTGCCGTTCAGCGAAGAGGTTTGCGACGACGTTAGGGCGCTGTTGAGGAGGTACAAGGAGGGTTGGTCGATGGTGCCGTGCTCCGACACCGGAATATTCCTTTCGTGGAGGGAAACTCCGGTGGTGTGGGCCAGTGCATGGAGGCCTTAA 1491 0.558 MDTLFRLVSFQQQQHHQPQPDPSLNSTTSRTSSSSRSSRQNYYHYSNQEDEECFNFYMDEEDLSSSSSKHYYPYHNVSTTTTTTTTTNTFSTTTNTDYSYSFSPTPPLPDFNFQFSPNWSHNLLLETARAFADNNSTRLHHLLWMLNELSSPYGDTDQKLAAYFLQALFSRVTDAGDRTYRTLASASEKTCSFESTRKTVLKFQEVSPWTTFGHVASNGAILEALEGNPKLHILDISNTYCTQWPTLLEALATRTDETPHLRLTTVVTGRTGNSVQRVMKEIGTRMEKFARLMGVPFKFNVVHHAGDLSELNFSELNLKDDEALAINCVNALHSVSAAGNSRDALISSLQGLQPRIVTVVEEEADLDVGIEGYEFVRGFEECLRWFRVYFEALDESFVKTCNERLMLERAAGRAVVDLVACSPADSFERRETAARWGTRLHGGGLSAVPFSEEVCDDVRALLRRYKEGWSMVPCSDTGIFLSWRETPVVWASAWRP 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00954 496 Pfam GRAS domain family 122 495 IPR005202 -
Phco8g00954 496 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 88 485 IPR005202 -
Phco8g00954 496 ProSiteProfiles GRAS family profile. 111 495 IPR005202 -
Phco8g00954 496 MobiDBLite consensus disorder prediction 8 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00954 Phco-Chr8 9894599 9896089 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Phco8g00954 GRAS 2.7e-101 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00954 8 9894599 9896089 Phco8g00954 8 9894599 9896089 ECH
Phco4g01200 4 10027771 10029222 Phco8g00954 8 9894599 9896089 PCT