Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00934 ATGTACAAAACACAGAGTTTCGGACCTAACATAACACCCCCGAAAATCCCCCAAAATTACAGCGTTTGCCCTCATTGGGTGGTCCATAAATTACGTAGCCCTGCAACGCTTTCCCTCCCTTTCTCCCTCCTCTCCTCCTCCGCCTCTAGTTTCAGAAATCCCCGTCACTCTGCCGCCGTAACCATGCTCACCACCCACCCTCCCTCTGAGCCCCTCCTCGGCAACCTATTCTCCGCCTTCCCTGGCGACTTCACGCTCTGGGACGACGACTCCCACCACCTCCTCTCCCCCAAACCCGTCACTTCCAGCTCCAGCTCCGACAAACCGGAGCCGGAGCCAGCTGAACCAGACCATCCCGTGGTCTCGGTGGTGGAAGACCGGAAACTTCGGCGCATGATATCGAACCGCGAATCTGCCCGCAGGTCTCGCATGAGAAAACAGAGACACCTGGAGAACCTTCGGAACCAGTTGAGCAAGTGCAGGGTCGAAAACCGGGAACTGAATAACCGGTTGCAGTTCGTCCTGCACCACCGTGACCGCCTCCGAACCGAAAACGAATGGCTCCGGTCCCAGCGAACCTTCCTCCTCCAAAAAGTGGCCAACTTAACCCAAACTTTGATTTTCCAACAATTCCAACAAGCCATCTCCCCTGCATGGACATGTAACACTTCGCTCATCCCAATTAATCAAGTTAATTAA 699 0.5465 MYKTQSFGPNITPPKIPQNYSVCPHWVVHKLRSPATLSLPFSLLSSSASSFRNPRHSAAVTMLTTHPPSEPLLGNLFSAFPGDFTLWDDDSHHLLSPKPVTSSSSSDKPEPEPAEPDHPVVSVVEDRKLRRMISNRESARRSRMRKQRHLENLRNQLSKCRVENRELNNRLQFVLHHRDRLRTENEWLRSQRTFLLQKVANLTQTLIFQQFQQAISPAWTCNTSLIPINQVN 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00934 232 Coils Coil 136 170 - -
Phco8g00934 232 Pfam bZIP transcription factor 125 185 IPR004827 GO:0003700|GO:0006355
Phco8g00934 232 SMART brlzneu 123 187 IPR004827 GO:0003700|GO:0006355
Phco8g00934 232 Gene3D - 126 206 - -
Phco8g00934 232 MobiDBLite consensus disorder prediction 97 120 - -
Phco8g00934 232 SUPERFAMILY Leucine zipper domain 127 177 IPR046347 GO:0003700|GO:0006355
Phco8g00934 232 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 125 188 IPR004827 GO:0003700|GO:0006355
Phco8g00934 232 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 130 145 IPR004827 GO:0003700|GO:0006355
Phco8g00934 232 PANTHER BZIP TRANSCRIPTION FACTOR 44 57 209 - -
Phco8g00934 232 CDD bZIP_plant_GBF1 128 179 IPR045314 GO:0003700|GO:0006355
Phco8g00934 232 FunFam BZIP transcription factor 125 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00934 Phco-Chr8 9686940 9687638 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Phco8g00934 bZIP_1 2.2e-07 CL0018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01217 4 10181979 10182503 Phco8g00934 8 9686940 9687638 PCT