Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00923 ATGGGGAGAGCTCCTTGCTGTGACAAAGCCAACGTGAAGAGAGGTCCATGGTCGCCTGAAGAAGACGCCAAACTCAAATCTTACATCGAAGACCACGGCACAGGTGGCAACTGGATAGCTTTGCCCCAGAAAATAGGTCTGAAAAGGTGCGGCAAAAGTTGTCGTCTCAGATGGCTGAACTATCTTCGCCCAAACATCAAACACGGGGGTTTCTCAGAAGAAGAAGACCACATAATTTGCAGCCTCTATGTTAACATTGGAAGCAGGTGGTCAATTATAGCAGCGCAATTACCAGGGCGCACGGATAATGACATAAAGAACTATTGGAATACTAAGCTGAAGAAGAAGCTACTGGGGAAGCAAAGGAAGGAGCAACACGCTCAAGCTCGAAGAGTTGGTGGCCTAAAGCAAGAGATCAAGAGGGAGAGTGAAGATTTGATGTTACCTGTGGGAGTTATTAGCCGAACTCCTTATTGGCCACATGAACAGAATTCTTGGCCCATTCCAGTGGCAAATGCTTGCCTCCAATACTATGATCTGAACAACAAAACATCATCCGTCATACACATCCCTGACAACACAGTCACTGCCACCATGAACTCGCAATACTCATCATTTGACATTTCCTTAACACAAGACCAGCTATATCCCTCCACAGTTAACATGATCACCACAGACACATGTCACACATCGAATGTCTTTCAAGGGTTTGGGAACATCTCCAGTGATTTGGCCTGTGTCAACTCGCAAAATATAGATGGATCAGAACTGGTTTTTTATGGAATGGAGTCAATGGAAATTGCCAATGGTAGCACAAACACGAATTCAACAGAAAGCACAACTTGGGGAGATATAAGCTCTATGGTTTACCCGCCTTTGGTTTCTCACTACGAAGCTTGCCAACAGAGAAAAATGCCTCAAGATGTTACTTTCGAGGAGTCAAGTTACTTCGCGATGCGAACGCAATAA 969 0.4499 MGRAPCCDKANVKRGPWSPEEDAKLKSYIEDHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDHIICSLYVNIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLLGKQRKEQHAQARRVGGLKQEIKRESEDLMLPVGVISRTPYWPHEQNSWPIPVANACLQYYDLNNKTSSVIHIPDNTVTATMNSQYSSFDISLTQDQLYPSTVNMITTDTCHTSNVFQGFGNISSDLACVNSQNIDGSELVFYGMESMEIANGSTNTNSTESTTWGDISSMVYPPLVSHYEACQQRKMPQDVTFEESSYFAMRTQ 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00923 322 FunFam Transcription factor RAX3 70 145 - -
Phco8g00923 322 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Phco8g00923 322 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Phco8g00923 322 PANTHER OS09G0431300 PROTEIN 1 281 - -
Phco8g00923 322 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Phco8g00923 322 Gene3D - 7 68 - -
Phco8g00923 322 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Phco8g00923 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Phco8g00923 322 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Phco8g00923 322 FunFam Transcription factor RAX3 7 68 - -
Phco8g00923 322 Gene3D - 70 142 - -
Phco8g00923 322 CDD SANT 16 62 IPR001005 -
Phco8g00923 322 SMART sant 13 64 IPR001005 -
Phco8g00923 322 SMART sant 67 115 IPR001005 -
Phco8g00923 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00923 Phco-Chr8 9552776 9554154 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco8g00923 Myb_DNA-binding 7.4e-14 CL0123