LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco8g00919	ATGATGGGTCTTCATCAGGATCCCAGCGACTCAGGCCTTCAGCTTATTCTAGGATTGGCTTTGACTGCCACCCCAGAAGACACCATCACTCCGTCACCACCATCCATTTCCAACAACCTTCATCGTCATCATCTTACAACTCTTAGGCCAAACTCCTATTCCTCCAAATCCAGTTTCATCTCTACAAGTAACTCCGAGCCTGAGCCTGAGCCATCACTAACGTTGGGCCTGTCCCGCGAGACTTACCGGCAGCAGGTGGTGAAACTTCCCAGAAACATAGGACACAACAAAGTCTCCTCTGAGGACCCTCTTGAACAGACTTCACCTCACAGTGCTATCTCTTCCTTCTCCAGTGGAAGGGTCAAGAGGGAGAGGGATCTTAGCTGTGAAGAAGTGGATGCAACAGAGACAGAGAGGGTTTCTTCAAGAGCCAGCGACGAAGAAGAGGACGGCACCACCGCCAGGAAGAAACTTAGGCTTACCAAAGAACAATCCGCTTTGCTTGAAGAAAGCTTCAAACAACACAGCACCCTCAATCCTAAACAGAAGCAAGCTTTGGCCAAGCAGTTAAGTCTTCGGCCTCGACAAGTGGAAGTGTGGTTCCAGAACCGGAGAGCCAGAACAAAGCTGAAGCAGACAGAGGTGGACTGCGAGTTCCTAAAAAAGTGTTGTGAAACATTAACAGACGAGAACAGAAGGTTGCAGAAGGAGCTGCAAGAGCTGAAGGCACTTAAACTGGCTCAGCCCTTGTACATGCCTATGTCTGCGGCAACCCTCACCATGTGTCCCTCCTGTGAGAGGCTCGGTGGCGGCGTCGGCGTCGGCGGTGGCGCTTCCGCTAAGTCACCCTTCTCAATGGCTCCTAAACCGCACTTCTTCAACCCCTTCGCCAATCCTTCTGCAGCATGTTGA	912	0.5143	MMGLHQDPSDSGLQLILGLALTATPEDTITPSPPSISNNLHRHHLTTLRPNSYSSKSSFISTSNSEPEPEPSLTLGLSRETYRQQVVKLPRNIGHNKVSSEDPLEQTSPHSAISSFSSGRVKRERDLSCEEVDATETERVSSRASDEEEDGTTARKKLRLTKEQSALLEESFKQHSTLNPKQKQALAKQLSLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELKALKLAQPLYMPMSAATLTMCPSCERLGGGVGVGGGASAKSPFSMAPKPHFFNPFANPSAAC	303

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco8g00919	303	SMART	HOX_1	153	215	IPR001356	GO:0003677
	Phco8g00919	303	FunFam	Homeobox-leucine zipper protein 18	136	216	-	-
	Phco8g00919	303	PANTHER	HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14	61	275	-	-
	Phco8g00919	303	Pfam	Homeodomain	155	209	IPR001356	GO:0003677
	Phco8g00919	303	Gene3D	-	159	209	-	-
	Phco8g00919	303	MobiDBLite	consensus disorder prediction	91	157	-	-
	Phco8g00919	303	MobiDBLite	consensus disorder prediction	48	78	-	-
	Phco8g00919	303	Pfam	Homeobox associated leucine zipper	211	245	IPR003106	GO:0006355\|GO:0043565
	Phco8g00919	303	SMART	halz	211	254	IPR003106	GO:0006355\|GO:0043565
	Phco8g00919	303	MobiDBLite	consensus disorder prediction	119	157	-	-
	Phco8g00919	303	SUPERFAMILY	Homeodomain-like	145	212	IPR009057	-
	Phco8g00919	303	MobiDBLite	consensus disorder prediction	99	118	-	-
	Phco8g00919	303	Coils	Coil	217	247	-	-
	Phco8g00919	303	ProSiteProfiles	'Homeobox' domain profile.	151	211	IPR001356	GO:0003677
	Phco8g00919	303	ProSitePatterns	'Homeobox' domain signature.	186	209	IPR017970	GO:0000981\|GO:0006355
	Phco8g00919	303	CDD	homeodomain	155	212	IPR001356	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco8g00919	Phco-Chr8	9489731	9490884	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-HD-ZIP	Phco8g00919		Homeodomain	2.9e-16	CL0123

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phco4g01225	4	10331174	10332528	Phco8g00919	8	9489731	9490884	PCT