Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00908 ATGCGACTCCTCCTCTGCCCCCTCTTCTTCATCTTCCTCTTCATCTTCCATTCTCACAAACTCAATGCTGCGCGCATCTCAGAATATCGCGCGCTTCTATCTTTCAAAGCCTCTTCCATAACAGACGACCCTAACAATGCTCTCTCCTCCTGGAACTCCTCCACCACCTACTGTTCCTGGTTCGGCATCACCTGCGACTCCCGCCTCCACGTCACAACCCTTAACCTCACGTCCTCCTCCCTCTCCGGCACTCTCAGCGATCATCTCTCCCACCTCCCTTTCCTCTCCCACCTCTCCCTCGCCGACAACCAGTTCTCCGGTCCCATTCCCGCCTCCTTCTCCTCTCTCTCCGCCCTCCGCCATCTCAACCTCTCCAACAACGCCTTCAACGCCACCTTCCCCTCCAACCTCGCGCGCCTCGCCAACCTCCAAGTCCTTGACCTCTACAACAACAACATGACCGGTCCCCTCCCCCTCGCCGTCGCTTCCATGCCCCTCCTCCGCCACCTTCACCTCGGTGGCAACTTTTTCTCCGGCCAGATCCCCCCCGAGTATGGTACCTGGCAGCACCTCCAGTACCTCGCCGTCTCCGGCAACGAGCTCTCGGGAAACATCCCTCCGGAGCTCGGAAACCTCACCGCGCTTCGCGAGCTCTACATTGGCTACTACAATGCTTATTCCGGCGGCATCCCGCCGGAGATTGGAAACCTGTCCCAGCTTGTCCGTTTAGACGCCGCGTATTGCGGACTCTCCGGCGAGATTCCAGCTGATCTTGGAAGGCTTCAGAATATGGACACTCTGTTTCTTCAGGTGAATGCGCTCTCGGGCTCGCTCACTCCTGAGCTGGGGAACCTGAAGAGCCTCAAGTCGATGGATCTGTCCAACAACATTCTCTCCGGCGAGGTTCCGGAGAGCTTTGCAGAGCTCAAGAATCTCACTCTGCTGAACCTCTTCCGGAACAAGCTCCACGGTGCCATTCCCGAGTTTGTCGGAGAGTTGCCGGCACTGGAGGTGTTGCAGCTTTGGGAGAACAACTTCACCGGAAGCATTCCTCAGAGTTTGGGAAAAAATGGAAAACTCACTGTCGTTGATCTTTCTTCGAACAAGTTAACGGGAATGCTTCCTCCAGATATGTGTTATGGGAATCGTCTTCAGACTCTGATAACTCTCGGGAATTATCTATTCGGTCCCATTCCTGATTCGATTGGGAAGTGTGAGTCTTTGAATAGGATTCGAATGGGGGAGAACTTTCTTAATGGTTCTATTCCTATCGGTCTATTTGGGCTTCCGAAACTTACCCAAGTCGAGCTTCAGAACAATCTTCTCACGGGGCAGTTTCCCGAGGGTGGTTCCATTGCTGTTAATCTCGGTCAGATTAGTCTCTCTAATAACAAGCTCTCTGGGTCGTTGCCACCCACTATTGGAAACTTCACCAGCATGCAGAAGCTTCTTCTCGACGGTAACAAGTTCTCTGGTCAAATCCCTTCGCAAATAGGCAGGCTGCAGCAGCTTTCCAAAATTGATTTCAGCCGTAACAAGTTTTTGGGTCCCATTGCTCCTGAGATAAGTCGGTGCAAGCTTTTGACCTTCATTGATCTCAGCCGCAATGAGCTCTCTGGTGAGATTCCAAACCAGATAACTGCCATGCGGATACTGAATTACCTCAACCTTTCAAGAAACCATTTGGTAGGCTCCATTCCAGGGTCCATAGCCTCTATGCAAAGTTTAACTTCTGTTGATTTTTCGTACAACAATCTCTCTGGTTTGGTTCCTGGAACCGGGCAGTTCGGCTACTTTAACTATACCTCTTTCCTAGGGAACCCTGAACTCTGTGGTCCTTATTTGGGTCCTTGTAAAGACGGGGTTCCAAATGGCCCTCGTAAACCTCACCTTAAAGGTCCTCTCTCTTCCTCTTTGAAGCTTCTGTTAGTTGTAGGGTTGCTTGTATGCTCCATCGCGTTTGCTGTTGCAGCAATAATCAAAGCCCGGGCTTTGAAAAAGGCTAGTGAAGCTCGTGCGTGGAAATTAACTGCATTCCAGCGTTTGGACTTCACTGCTGATGATGTTTTGGACTCCTTGAAGGAGGACAACATAATAGGAAAGGGCGGTGCAGGCATTGTGTACAAAGGTGCAATGCCGAATGGGGATCAGGTTGCTGTGAAAAGGTTACCTGCCATGAGCAGAGGATCTTCGCATGACCATGGTTTCAATGCTGAGATTCAGACTTTGGGGAGGATTCGGCACAGACACATTGTTAGACTGTTGGGTTTCTGTTCAAACCACGAGACAAATCTCTTGGTGTATGAGTATATGCCTAATGGAAGTTTAGGTGAGGTTCTTCATGGCAAGAAAGGTGGTCATTTGCATTGGGACACAAGGTATAAAATTGCTGTGGAGGCCGCGAAGGGCCTTTGCTATCTACACCACGACTGTTCGCCACTCATTGTTCATCGAGATGTTAAATCCAACAATATCCTTCTTGATTCCAACTTTGAAGCTCATGTTGCGGATTTTGGGCTCGCTAAGTTCCTGCAAGATTCTGGAACATCCGAATGCATGTCTGCAATTGCCGGTTCGTATGGATACATAGCTCCAGAGTATGCCTACACGTTAAAAGTTGACGAGAAAAGTGACGTGTACAGCTTTGGAGTTGTTCTATTGGAGCTTGTAACAGGCAGGAAACCAGTTGGGGAGTTTGGTGATGGTGTGGACATTGTGCAATGGGTGAGGAAAATGACGGACTCAAACAAGGAAGGAGTTCTAAAGGTTCTTGATCCCAGACTTCCCTCAGTTCCACTCCATGAGGTGATGCATGTTTTCTATGTAGCCATGCTATGTGTTGAAGAACAGGCAGTGGAGCGACCAACTATGCGAGAAGTTGTTCAAATTCTGACCGAACTTCCAAAGTCACCAAGCTCAAAACAGGGAGACTTAACAATCATGGAGTCCTCTCTGCCATCATCAAACAGTTTAGAGTCTCCAACGGCATCTAAGGAACCTAAAGATAATCAACATCCTCCTCAGTCTCCACCACCTGATCTTCTTAGCATTTGA 3054 0.4971 MRLLLCPLFFIFLFIFHSHKLNAARISEYRALLSFKASSITDDPNNALSSWNSSTTYCSWFGITCDSRLHVTTLNLTSSSLSGTLSDHLSHLPFLSHLSLADNQFSGPIPASFSSLSALRHLNLSNNAFNATFPSNLARLANLQVLDLYNNNMTGPLPLAVASMPLLRHLHLGGNFFSGQIPPEYGTWQHLQYLAVSGNELSGNIPPELGNLTALRELYIGYYNAYSGGIPPEIGNLSQLVRLDAAYCGLSGEIPADLGRLQNMDTLFLQVNALSGSLTPELGNLKSLKSMDLSNNILSGEVPESFAELKNLTLLNLFRNKLHGAIPEFVGELPALEVLQLWENNFTGSIPQSLGKNGKLTVVDLSSNKLTGMLPPDMCYGNRLQTLITLGNYLFGPIPDSIGKCESLNRIRMGENFLNGSIPIGLFGLPKLTQVELQNNLLTGQFPEGGSIAVNLGQISLSNNKLSGSLPPTIGNFTSMQKLLLDGNKFSGQIPSQIGRLQQLSKIDFSRNKFLGPIAPEISRCKLLTFIDLSRNELSGEIPNQITAMRILNYLNLSRNHLVGSIPGSIASMQSLTSVDFSYNNLSGLVPGTGQFGYFNYTSFLGNPELCGPYLGPCKDGVPNGPRKPHLKGPLSSSLKLLLVVGLLVCSIAFAVAAIIKARALKKASEARAWKLTAFQRLDFTADDVLDSLKEDNIIGKGGAGIVYKGAMPNGDQVAVKRLPAMSRGSSHDHGFNAEIQTLGRIRHRHIVRLLGFCSNHETNLLVYEYMPNGSLGEVLHGKKGGHLHWDTRYKIAVEAAKGLCYLHHDCSPLIVHRDVKSNNILLDSNFEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELVTGRKPVGEFGDGVDIVQWVRKMTDSNKEGVLKVLDPRLPSVPLHEVMHVFYVAMLCVEEQAVERPTMREVVQILTELPKSPSSKQGDLTIMESSLPSSNSLESPTASKEPKDNQHPPQSPPPDLLSI 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00908 1017 SUPERFAMILY L domain-like 358 618 - -
Phco8g00908 1017 SMART LRR_typ_2 573 596 IPR003591 -
Phco8g00908 1017 SMART LRR_typ_2 358 381 IPR003591 -
Phco8g00908 1017 SMART LRR_typ_2 477 501 IPR003591 -
Phco8g00908 1017 SMART LRR_typ_2 164 190 IPR003591 -
Phco8g00908 1017 SMART LRR_typ_2 333 357 IPR003591 -
Phco8g00908 1017 SMART LRR_typ_2 285 308 IPR003591 -
Phco8g00908 1017 SMART LRR_typ_2 116 140 IPR003591 -
Phco8g00908 1017 SMART LRR_typ_2 92 115 IPR003591 -
Phco8g00908 1017 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 771 981 - -
Phco8g00908 1017 Gene3D Transferase(Phosphotransferase) domain 1 771 983 - -
Phco8g00908 1017 ProSitePatterns Serine/Threonine protein kinases active-site signature. 815 827 IPR008271 GO:0004672|GO:0006468
Phco8g00908 1017 MobiDBLite consensus disorder prediction 970 1003 - -
Phco8g00908 1017 Gene3D Phosphorylase Kinase; domain 1 660 770 - -
Phco8g00908 1017 SUPERFAMILY Protein kinase-like (PK-like) 688 964 IPR011009 -
Phco8g00908 1017 SMART serkin_6 693 963 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g00908 1017 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 22 85 - -
Phco8g00908 1017 Gene3D Ribonuclease Inhibitor 332 622 IPR032675 -
Phco8g00908 1017 ProSiteProfiles Protein kinase domain profile. 693 967 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g00908 1017 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 86 329 - -
Phco8g00908 1017 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 167 959 - -
Phco8g00908 1017 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Phco8g00908 1017 Pfam Leucine Rich Repeat 287 309 IPR001611 GO:0005515
Phco8g00908 1017 MobiDBLite consensus disorder prediction 970 1017 - -
Phco8g00908 1017 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 337 622 - -
Phco8g00908 1017 Pfam Leucine rich repeat 70 128 IPR001611 GO:0005515
Phco8g00908 1017 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 662 770 - -
Phco8g00908 1017 SUPERFAMILY RNI-like 74 395 - -
Phco8g00908 1017 Pfam Protein tyrosine and serine/threonine kinase 695 964 IPR001245 GO:0004672|GO:0006468
Phco8g00908 1017 Gene3D Ribonuclease Inhibitor 26 183 IPR032675 -
Phco8g00908 1017 Gene3D Ribonuclease Inhibitor 263 331 IPR032675 -
Phco8g00908 1017 Gene3D Ribonuclease Inhibitor 184 262 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00908 Phco-Chr8 9389633 9393192 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Phco8g00908 PK_Tyr_Ser-Thr 1.4e-46 CL0016