Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00906 ATGACACAAATCTCATCGACCATCTACTTGCCTGAATTTTCTTACCTTACCATTTTTTTTTATCAACAGGGAATGGAGGACCCCACTTTGTTTCATCAATACCCGATGGATTCCTTTCCATTCCAGCTCGATGATTTTGACTTTGAGTCCTTCTCCGCGTCCCCAAAGGGTTCTTCCTCTCACAAGCGCTTGAGCTCCGAAAGCACACAAAACTCTTCCCTCACTCAAAGTGCTGAAACTTCTGTTGCCCCACCTAGACCAACCAAGCAACCCAAGACTACTACGAGTACCTGGAGTGCTTACGGCACTGACATGATGGCTCCCAAGGCTGCTTCCTCTTCATCCTCCAAAATCATCTCCTTTCACAAATCCAATGCATCTTCTGTTTCTTCCCAACAATTCTACAAACTCGATGCTGCAAAACTACTGAAGAAGCCTAAAATTGAAACTGGGTATGGTGAGAGCCTGGATTTTGCAGCTGTGGCTTCTCAAAGTTCCTATGACAACGATAGTTTTCTAGACTATGAGAAGCAAGAGAAAAAGGCTGCAGCCACAATGGCCAGAAACCCAACCCAAGCTCAAGATCACGTCATAGCCGAAAGAAAACGAAGGGAAAAACTCAGCCAGAGGTTCATTGCTCTTTCGGCCTTAGTTCCTGGACTCAAGAAGATGGACAAGGCTACCGTCCTGGAAGATGCTATAAAGTACGTGAAACAACTACAAGAACGGGTAAAGATTCTGGAGGAACAAACTGTGGATAAAACAGTTGAATCTGCAGTCTTTGTGAAAAGATCTGTTGTCTTCACCAAAGATGATAGCTCCTACTCCGGTGAAAACTCCAACCAGTCACTCCCCGAAATTGAAGCAAGAATTTCTGGTAAAGAGGTACTCGTCAGGCTCCACTGCGACAAACACAGTGGACGAGCAGCTGCTATACTAAGGGAATTAGAGAAGCATAATCTCACAGTTCAGAGTAGCAGCTTTTTGCCCTTTGGGAATAACACTCTTGACATAACTATTGTTGCTAAGATGGACAAGGACTACTGCTTGACTGCAAAAGATCTCATAAGAAACTTAAGTCAGTGTTTGAGGCAGCTTTCATAG 1104 0.4429 MTQISSTIYLPEFSYLTIFFYQQGMEDPTLFHQYPMDSFPFQLDDFDFESFSASPKGSSSHKRLSSESTQNSSLTQSAETSVAPPRPTKQPKTTTSTWSAYGTDMMAPKAASSSSSKIISFHKSNASSVSSQQFYKLDAAKLLKKPKIETGYGESLDFAAVASQSSYDNDSFLDYEKQEKKAAATMARNPTQAQDHVIAERKRREKLSQRFIALSALVPGLKKMDKATVLEDAIKYVKQLQERVKILEEQTVDKTVESAVFVKRSVVFTKDDSSYSGENSNQSLPEIEARISGKEVLVRLHCDKHSGRAAAILRELEKHNLTVQSSSFLPFGNNTLDITIVAKMDKDYCLTAKDLIRNLSQCLRQLS 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00906 367 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 191 240 IPR011598 GO:0046983
Phco8g00906 367 CDD bHLH_AtNAI1_like 193 265 - -
Phco8g00906 367 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 195 251 IPR036638 GO:0046983
Phco8g00906 367 SMART finulus 197 246 IPR011598 GO:0046983
Phco8g00906 367 MobiDBLite consensus disorder prediction 52 99 - -
Phco8g00906 367 Coils Coil 230 257 - -
Phco8g00906 367 PANTHER BHLH TRANSCRIPTION FACTOR 35 364 - -
Phco8g00906 367 FunFam Basic helix-loop-helix family protein 188 257 - -
Phco8g00906 367 Pfam Helix-loop-helix DNA-binding domain 194 241 IPR011598 GO:0046983
Phco8g00906 367 Gene3D - 181 255 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00906 Phco-Chr8 9338230 9340174 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco8g00906 HLH 7.6e-11 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00906 8 9338230 9340174 Phco8g00906 8 9338230 9340174 ECH
Phco4g01238 4 10449496 10451147 Phco8g00906 8 9338230 9340174 PCT