Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00905 ATGACCTCAATGGAGGAATCATGGACTAGTTGGCTCTGTGATATGGAACCAGATGATTACAGTTTCATCAGTCAATCAGATATAAAGGTGGAGGATGTGATTGGAAGTTTAGTATCTCCAAGTGATATAGCCACTGCTTTAGAAGAGAACCCGCAGAGCTCTTTTTCCCCGGAGAGTCACTCTTCAGTCAATGAGAGTGGCATAGAAGAGAGGCCTTTGAAGTTACTCAAGAAGACATGCACTTCAAACTCTGCCAAAACAGACCAACTCCCACAAAAGAAAGCTTCCACACCCTGCTCCTATATTCTTTCCTTTGACAACACAAATCCACCAACAGCAAAGGTTGAATCGCCTGTAAAACCAGAAACCAAGGTTAATCGTGGGATAGCTCTGCCTTCAAAGAATGAACCAAAACGTGTTACTCAGGAGAGCAAGAAGACGGGCTCATCAGCCAGATCTTCTCATCACACACAAGATCACATAATCGCCGAGAGAATGAGGAGAGAAAAGATTAGCCAGCAGTTCATAGCCCTCTCAGCCCTTATTCCAGACCTCAAAAAGATGGACAAGGTATCTGTATTGGGGGAAGCTATAAGGTACGTGAAGGAGCTGAAGGAAAAAGTAAAAGTGATGGAGGAGCAGGGCAAAAGGAAAAGCCAGGAACCGGTGATGCGAGGGAAGAAATCTCAGGTTTGTGCTGCTGCGGACGAGGATGTCTCAGACACTTCATCAAATTCCTGTGAGTTCGGAAATTCTGATGACCCCTCACCCAAAACAAATCTGTCACTGCCAGAAGTAGAAGCAAGGGTGTCAAAGAAGAACGTGCTGATTCGAATCCTCTGCGAGAAAGAAAAGGTAGTGCTGGTGAACATTTTTAGAGAGATAGAGAAACTTCATCTCTCAGTCATCAATAGCAGCGCCTTATCTTTCGGTTCCTCTGTTCTCGACACAACCATCGTAGCCGAGATGGAGGATGAATTCAAGATGAGCGTGAAGGAACTGGCTGGAAATCTGAGAGTAGCACTGATGCAGTTTATGTAG 1041 0.4505 MTSMEESWTSWLCDMEPDDYSFISQSDIKVEDVIGSLVSPSDIATALEENPQSSFSPESHSSVNESGIEERPLKLLKKTCTSNSAKTDQLPQKKASTPCSYILSFDNTNPPTAKVESPVKPETKVNRGIALPSKNEPKRVTQESKKTGSSARSSHHTQDHIIAERMRREKISQQFIALSALIPDLKKMDKVSVLGEAIRYVKELKEKVKVMEEQGKRKSQEPVMRGKKSQVCAAADEDVSDTSSNSCEFGNSDDPSPKTNLSLPEVEARVSKKNVLIRILCEKEKVVLVNIFREIEKLHLSVINSSALSFGSSVLDTTIVAEMEDEFKMSVKELAGNLRVALMQFM 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00905 346 PANTHER BHLH TRANSCRIPTION FACTOR 51 345 - -
Phco8g00905 346 MobiDBLite consensus disorder prediction 49 70 - -
Phco8g00905 346 MobiDBLite consensus disorder prediction 49 63 - -
Phco8g00905 346 MobiDBLite consensus disorder prediction 110 159 - -
Phco8g00905 346 MobiDBLite consensus disorder prediction 138 159 - -
Phco8g00905 346 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 158 221 IPR036638 GO:0046983
Phco8g00905 346 Coils Coil 194 221 - -
Phco8g00905 346 MobiDBLite consensus disorder prediction 236 259 - -
Phco8g00905 346 Gene3D - 146 221 IPR036638 GO:0046983
Phco8g00905 346 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 155 204 IPR011598 GO:0046983
Phco8g00905 346 SMART finulus 161 210 IPR011598 GO:0046983
Phco8g00905 346 MobiDBLite consensus disorder prediction 235 261 - -
Phco8g00905 346 Pfam Helix-loop-helix DNA-binding domain 159 204 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00905 Phco-Chr8 9315585 9316967 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco8g00905 HLH 3.3e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00905 8 9315585 9316967 Phco8g00905 8 9315585 9316967 ECH
Phco4g01239 4 10463603 10466318 Phco8g00905 8 9315585 9316967 PCT