Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00904 ATGATGGAGGAATCAAATAAACCAATGGATGAAGCTTCAGCACTCAGCTGGTTATCTGATTTGGACATGGATGATTACAATTTGTTTCCAGATGAGTGTGCCCTGAACTTGAACTTGTTTGATGACCAAGAGTTTCTGCCACAAGACATTGTGAATGCCCTTGAAGAACAGACACAGACCCTGCAGCAATCTCTGTCTTCGGAGTGCCCTTCCAAAACTGTGAGCAACTCATCCACCGATGAAACCAGTTTTGACTTTGAGAGACCAGCCAAGTTACTGAAAACGACAAGCAGTAGTTGCTGTAACTCTGACTCATCCACCATCACCAACAACCTCTCACCCAAACTTTCCCCATCAACATCCTTCTCCTCCCTTCAGTCTCAGATTCTCTCTTTTGACAACTCCAACTCCTCCCCTCCCAACACCACCACCCAGTTTTACGGCTTTGGCTTAAGCTCAATTCAGAACGAAATGTTGTCAGTGTCAGTGCCCCAACCGACAAAATCACGGCTCCCTAATCAAACCCCAAAATGGTCCTCAAAAAATCAGAACTTTGAAACAAAACCCTCATCACATGGTAAGAGATCTCCTGTACACGCTCAGGATCACATCATGGCCGAGAGAAAGCGAAGAGAGAAGCTCAGCCAGAGCTTCATTGCTCTTGCAGCTCTTGTTCCTGGCCTAAAGAAGATGGATAAGGCTTCTGTGTTAGGGGACGCTATCAAATATGTGAAAGATCTTAAAGAGCGTTTGGCAGTGCTTGAAGAGCAGAGCAAGAAAACAAGGGGAGAATCGGTGGTGGTCCTGAACAAGCCAGACCTCTCAGGTGATGATGATTCTTCTTCATGTGATGAGAGCATTGATGCTGATAGTGTCAGTAACTCACTGTTTGAAGTGGAATCAAGAGTGTCAGGGAAGGAGATGCTGCTTCGGATCCACTGCCGGAAGCAAAAGGGTCTTCTCGTCAAATTACTGGCGGAGATTCAAAGAAATAACCTCTTCGTTATTAATAGCAGTATCTTACCATTCGGTGATTCTATCCTTGACATTACCGTAGTTGCTCAGATGGGAGAAAATTACAATTTGACCACAAAGGGACTTGTGAAGAACCTACGCGTGGCGGCCTATAAGATTATGTCATAA 1143 0.4506 MMEESNKPMDEASALSWLSDLDMDDYNLFPDECALNLNLFDDQEFLPQDIVNALEEQTQTLQQSLSSECPSKTVSNSSTDETSFDFERPAKLLKTTSSSCCNSDSSTITNNLSPKLSPSTSFSSLQSQILSFDNSNSSPPNTTTQFYGFGLSSIQNEMLSVSVPQPTKSRLPNQTPKWSSKNQNFETKPSSHGKRSPVHAQDHIMAERKRREKLSQSFIALAALVPGLKKMDKASVLGDAIKYVKDLKERLAVLEEQSKKTRGESVVVLNKPDLSGDDDSSSCDESIDADSVSNSLFEVESRVSGKEMLLRIHCRKQKGLLVKLLAEIQRNNLFVINSSILPFGDSILDITVVAQMGENYNLTTKGLVKNLRVAAYKIMS 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00904 380 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 203 264 IPR036638 GO:0046983
Phco8g00904 380 Coils Coil 237 264 - -
Phco8g00904 380 MobiDBLite consensus disorder prediction 164 199 - -
Phco8g00904 380 CDD bHLH_AtNAI1_like 198 271 - -
Phco8g00904 380 Pfam Helix-loop-helix DNA-binding domain 202 247 IPR011598 GO:0046983
Phco8g00904 380 SMART finulus 204 253 IPR011598 GO:0046983
Phco8g00904 380 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 198 247 IPR011598 GO:0046983
Phco8g00904 380 MobiDBLite consensus disorder prediction 164 191 - -
Phco8g00904 380 Gene3D - 191 264 IPR036638 GO:0046983
Phco8g00904 380 MobiDBLite consensus disorder prediction 64 85 - -
Phco8g00904 380 MobiDBLite consensus disorder prediction 64 83 - -
Phco8g00904 380 PANTHER BHLH TRANSCRIPTION FACTOR 57 376 - -
Phco8g00904 380 MobiDBLite consensus disorder prediction 100 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00904 Phco-Chr8 9292263 9294073 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco8g00904 HLH 4.9e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00904 8 9292263 9294073 Phco8g00904 8 9292263 9294073 ECH