Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00890 ATGCCCTGTTCAGTGTTGAATAGACTTCTTGCTAAAATTAGAAGACTCATTGCGTGGGAGGACTTGCAAGGAAGGTTGCACAGTTCGGCAGAGAAAGATAACATTTTTAAGTCCTTTATAATGCCAGTTCCACTTGCTCCCTATCCTGCACCAACAGCTCCTTATACACCACCAGCTAATGGTGCACAGAGTCAACTTGTCTGTTCTGGGTGTAGAAACCTTCTCATGTATCCAGCTGGAGCCACCTCTGTGTGCTGTGCTGTTTGCAATGCAGTAACAGGAGTGCCACCTCCTGGCACAGAAATGGCCCAGTTAGTTTGCGGAGGTTGCCATACTCTACTCATGTACATCCGTGGAGCGACAAATGTGCAATGTTCTTGTTGCCACACGGTCAATCTAGCTTTAGAAGCAAATCAGGTGGCACATGTCAACTGTGGGAACTGCAGGATGCTACTCATGTACCAATATGGAGCAAGATCCGTGAAATGTGCAGTTTGCAATTTTGTAACATCAGTTGGGGCCACAGCAAGCACCACCGAGCAGAAGTTCAACACTGTAACCATACAATAG 570 0.4667 MPCSVLNRLLAKIRRLIAWEDLQGRLHSSAEKDNIFKSFIMPVPLAPYPAPTAPYTPPANGAQSQLVCSGCRNLLMYPAGATSVCCAVCNAVTGVPPPGTEMAQLVCGGCHTLLMYIRGATNVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGATASTTEQKFNTVTIQ 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00890 189 Pfam LSD1 zinc finger 145 169 IPR005735 -
Phco8g00890 189 Pfam LSD1 zinc finger 68 92 IPR005735 -
Phco8g00890 189 Pfam LSD1 zinc finger 107 131 IPR005735 -
Phco8g00890 189 NCBIfam zinc finger domain, LSD1 subclass 142 172 IPR005735 -
Phco8g00890 189 NCBIfam zinc finger domain, LSD1 subclass 104 133 IPR005735 -
Phco8g00890 189 NCBIfam zinc finger domain, LSD1 subclass 65 94 IPR005735 -
Phco8g00890 189 SUPERFAMILY Multiheme cytochromes 68 166 IPR036280 -
Phco8g00890 189 PANTHER PROTEIN LSD1 56 93 IPR040319 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00890 Phco-Chr8 9088337 9091878 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Phco8g00890 zf-LSD1 6.8e-12 No_clan