Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00884 ATGGGAGGGGCAACACTGCCACCAGGATTTCGTTTCCATCCAACTGATGAGGAACTGGTGGGATACTACCTTAAAAGAAAAGTAGAGGGGCTTGAAATTGAGCTTGAAGTCATCCCTGTGATTGATTTTTACAAATTTGATCCCTGGGAGTTGCCGGAGAAGTCTTTCCTTCCAAAACGGGATATGGAATGGTTTTTCTTTTGTCCACGGGATCGCAAGTACCCAAATGGATCAAGAACAAATAGAGCTACCAAAGCTGGGTATTGGAAAGCCACTGGAAAAGACAGAAAGGTGGTGTGCCAGTCTAATCCATCCAATGTTACAGGGTACCGCAAGACCTTGGTTTTCTATGCTGGGAGGGCCCCTTTAGGAGATAGAACTGATTGGGTCATGCATGAGTATCGCCTCTGTGATGATCTTGGCCAACCCACACCATCTTTCCAGGGTGGTTTTGCCTTGTGCCGGGTTATTAAGAAGAATGAGAAGGCAAGTGCTACACAGGGAGAAAACAAGGGCAAAAGGGCTGGAAGCAGTTCCATCCATGGGAGTGACACCTCAGTGAGATTCTCTGGTGAGCCTTTCAGCAACTCTGGTGATTCTTCCTCTCAAGCGAGCCACCTGAATAATGAGAGTCGTTATTCAAGCCCAATTTCTTCTCCATACAATGTGGCTCCAATGGGAGAGATTAACCTAGCTTCTCTGGAAACCAATCCTTCAAACTTCTGGATCTCCCCTGACATGATTCTTGATTCTTCAAAGGACTACCCTGAATTACAACATGCTGTGGATGAGTATTTTCCACGGTACGACTTACCAAGTATGGGGACACAATTTCAATCATTGGAACATTCGGAAACTCCATCTAGTTTCTCCTACTCAAATGTCAATGGAGAAGTTGAATTTGCTGATACTCTCAGTCAAATCATGTCACCTTACTCAAGACAATGGAATTCCATGGACTTCTATGGAAAAGAAGGTGTCCCTTATGAAGATTATGATCAAATTAACTCAATCTCATATCCATGA 1026 0.4425 MGGATLPPGFRFHPTDEELVGYYLKRKVEGLEIELEVIPVIDFYKFDPWELPEKSFLPKRDMEWFFFCPRDRKYPNGSRTNRATKAGYWKATGKDRKVVCQSNPSNVTGYRKTLVFYAGRAPLGDRTDWVMHEYRLCDDLGQPTPSFQGGFALCRVIKKNEKASATQGENKGKRAGSSSIHGSDTSVRFSGEPFSNSGDSSSQASHLNNESRYSSPISSPYNVAPMGEINLASLETNPSNFWISPDMILDSSKDYPELQHAVDEYFPRYDLPSMGTQFQSLEHSETPSSFSYSNVNGEVEFADTLSQIMSPYSRQWNSMDFYGKEGVPYEDYDQINSISYP 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00884 341 Gene3D NAC domain 15 164 IPR036093 GO:0003677|GO:0006355
Phco8g00884 341 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 216 - -
Phco8g00884 341 SUPERFAMILY NAC domain 4 159 IPR036093 GO:0003677|GO:0006355
Phco8g00884 341 MobiDBLite consensus disorder prediction 163 219 - -
Phco8g00884 341 MobiDBLite consensus disorder prediction 170 219 - -
Phco8g00884 341 Pfam No apical meristem (NAM) protein 7 136 IPR003441 GO:0003677|GO:0006355
Phco8g00884 341 ProSiteProfiles NAC domain profile. 6 159 IPR003441 GO:0003677|GO:0006355
Phco8g00884 341 FunFam Nac domain-containing protein 86 15 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00884 Phco-Chr8 9025141 9026838 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Phco8g00884 NAM 1.5e-38 No_clan