Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00879 ATGGGTTGCCTACACTCCAAGACCGCTCATCTTCACTCCCCTGAAGACCCCCCCACTGCCTTGCCAGACTCAAAGAAACCCGATCCAGGGAATGGTGGGGATGATGTTGATCAAGAGGTTCAGGTTCCAGCATTCAAAGAGTACGGTCTGAGTGAACTTCGAAGGGCGACAAATGAGTTCAACACAGATTACATTGTTTCTGAGAGTGGGGAGAAAGCCCCCAATGTGGTCTACAGAGGGAAGCTTGAGAACAATCGGTTAGTTGCTGTGAAGCGGTTCTCAAAACTATCTTGGCCTGATGCTCAACAGTTCATGGCAGAGGCAGCTGGAGTTGGGAAAGTGAGGCACAAGAAACTGGTAAATCTAATTGGTTGCTGTGCTGAAGGAGATGAAAGGCTCTTGGTAGCTGAGTACATGCCAAATGATACTTTGTCCAAACATCTCTTTCATTGGGACAAGCAACCATTACCATGGGAAATGCGTGTAAGAGTTGCGTACCATGTTGCGCAGGCACTAGATCATTGCAGCATGGAAAACCGGAAAATATATCATGATCTGAATGCATATAGGATTCTTTTTGATGAGGATGGTGATCCCCGCTTGTCTAGTTTTGGGCTTATGAAAAATAGTCGAGACGGGAAAAGCTACAGTACTAATTTAGCTTACACTCCACCTGAATTTTTGCGAACAGGCAGGATAATCCCGGAGAGTGTGATCTACAGTTATGGAACTGTTCTTCTGGATCTTTTAAGTGGCAAGCATATTCCCCCTAGCCATGCTTTGGACCTGATTAGAGGGAAGAATGTTTTGTTGTTGATGGACTCTTCCCTAGAAGGGCAATATGCGAACGATGATGCTACAAAGTTGGTTGAGCTTGCTTCAAAATGTCTTCAGTTTGAGGCCAGAGAACGACCTGAAATTAAGTTTCTTCTTACTTCCGTTACACCTCTTCAGAAGCAGAAAGAGGTAGCATCTCATGTGTTGATGGGCCTAACTAAAAACACAGCAGTTCTACCAACCATGCTTTCTCCCCTTGGAAAGGCTTGTGCAAGGATGGATCTTACTGCTGTGCATGATATATTGTTAAAAACAGGTTATAAAGATGAAGAAGGTGCAGAAAATGAGCTTTCATTCCAAGAATGGACACAACAAGTGCAAGATATCTTGAACACTAAAAAGTTTGGGGATATTGCATTCAGGGACAAGGATTTCAAAAATGCTATTGAGTATTATTCTAAGTTGGTGGTTATGATGTCTGTTCCTTCTGCTACTGTGTTTGCAAGGAGAGCATTCTCCTACTTGATGAATGATCAAGCAGAACTTGCATTAAGAGATGCCATGCAGGCACAGGTATGCATACCTGATTGGCCAACTGCATTCTACCTGCAGGCTCTGGCTCTCTCAAAGCTGGGAATGGAAACCGATGCACATGACATGCTCAATGATGGGGCTGCCTTTGAAGCAAAGAGGTCTAACAGCTGGCGTGGTTAA 1491 0.4433 MGCLHSKTAHLHSPEDPPTALPDSKKPDPGNGGDDVDQEVQVPAFKEYGLSELRRATNEFNTDYIVSESGEKAPNVVYRGKLENNRLVAVKRFSKLSWPDAQQFMAEAAGVGKVRHKKLVNLIGCCAEGDERLLVAEYMPNDTLSKHLFHWDKQPLPWEMRVRVAYHVAQALDHCSMENRKIYHDLNAYRILFDEDGDPRLSSFGLMKNSRDGKSYSTNLAYTPPEFLRTGRIIPESVIYSYGTVLLDLLSGKHIPPSHALDLIRGKNVLLLMDSSLEGQYANDDATKLVELASKCLQFEARERPEIKFLLTSVTPLQKQKEVASHVLMGLTKNTAVLPTMLSPLGKACARMDLTAVHDILLKTGYKDEEGAENELSFQEWTQQVQDILNTKKFGDIAFRDKDFKNAIEYYSKLVVMMSVPSATVFARRAFSYLMNDQAELALRDAMQAQVCIPDWPTAFYLQALALSKLGMETDAHDMLNDGAAFEAKRSNSWRG 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00879 496 SUPERFAMILY TPR-like 387 485 IPR011990 GO:0005515
Phco8g00879 496 SUPERFAMILY Protein kinase-like (PK-like) 51 315 IPR011009 -
Phco8g00879 496 FunFam probable serine/threonine-protein kinase At5g41260 140 331 - -
Phco8g00879 496 ProSiteProfiles Protein kinase domain profile. 63 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g00879 496 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 34 491 IPR045845 GO:0004672|GO:0009742
Phco8g00879 496 MobiDBLite consensus disorder prediction 1 38 - -
Phco8g00879 496 Gene3D Tetratricopeptide repeat domain 386 495 IPR011990 GO:0005515
Phco8g00879 496 FunFam probable serine/threonine-protein kinase At4g35230 386 495 - -
Phco8g00879 496 FunFam probable serine/threonine-protein kinase At4g35230 35 138 - -
Phco8g00879 496 Pfam Protein tyrosine and serine/threonine kinase 76 311 IPR001245 GO:0004672|GO:0006468
Phco8g00879 496 Gene3D Transferase(Phosphotransferase) domain 1 140 332 - -
Phco8g00879 496 Gene3D Phosphorylase Kinase; domain 1 34 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00879 Phco-Chr8 8962340 8967049 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Phco8g00879 PK_Tyr_Ser-Thr 4.5e-28 CL0016