Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00869 ATGGAACTGAACAAGCATTTTCTTTTGAGCCAAGCTGTTTCATTGATGATCAGAGAGCATGACAGTTTTGATCTGAACCTTGTTTCGGGGCTGACCTTTAGGTCTGATGCCACTGTTCTGCATTTTCTGTTGGCTATTTGGGATCTAAACGATGCCAAGCCAGCTATGGTTTTCACTGCCAATGATTTACAAGAATGGAAAGATTTTCCCAAAGGACTCAAGGTTCTTCTTCTTGAGGGAGACAGTATTTCTGCTGCCGAAATAAGGGCAAAGCTCGAAGCCATGGACTATAATGTTTCTACATTCTGTGATGAGAATGAAGCCTTGTCAGCAATCTCAAGTGGACCTGAAAGCTTCCACATTGCCATAGTAGAGGTGAGTTCAAGCAGTAGCCAGGGAGGTTTCAAATTTCTTGAGAATGCCAAGGACTTGCCAACCATTATGACTTCTAACAACCATTGCCTGAACACCATGATGAAGTGCATAGCGCTTGGTGCAGTTGAGTTCCTCAGCAAACCACTCTCTGAGGACAAGCTCAGAAATATCTGGCAGCATGTGGTTCACAAGGCATTCAGTTCTGGGACAAGTATCCTGTGTGAATCGCTTAAACCTGTCAAGGAATCTGTAGTGTCCATGTTGCAGCTCCAAAAAGACAATGAACAACATCAAAGTAGCGTATCCATTAATATAGAGAAAGTATCCAGGTTTACTGATAATGATCATGTACTCTCTCCTAGAAATGATAAATATCCAGCTCCTTCAACCCCACAATTGATGCATGGGACAAGATTGTTAGACGATGGTGATTGCCAAGAGCAGACTAATTGCTCAACAGAAAAAGAAAGTGGGGAACATGATGAAGAATCTAAATCTGTCGAAACTACATGTGGAAATTTGAATGCTGAAACTGAAAGTACTCCTCAAGAGAGGAAATCGGAAATTACTTTGGCTAGGAAGGAAGTGGATTTAGTTGACGCTTCCAAGGGTGAGAATGTTGCTTCTCTACATACACAAAAAAGAAAGGTTGTAAGCAACACTGATAAAAATACAAAATCTCCAAATAAAGTAGGTGTTCGTAGTGATTCATGTGAGACAAGACCAAGTCGGAAGAAAATGAAAGTAGACTGGACGCCTGAGCTGCACAAAAAATTTGTGAAGGCAGTTGAGCAACTAAGCATTGATCAAGCCATTCCTTCTAGAATATTAGAATTAATGAAAGTGGAGGGCTTGACAAGGCATAATGTGGCAAGCCATCTTCAGAAGTACAGAATGCACAAGAGACAAATCTTTCCCAAGGAAGAAGATCGGAAATGGTTGAATCAAAGAGAAAGGAGCTATTGTCTTCAAAGACCAATTATGGCCTTTCCTCCATATCATTCTAATCACACACTTCCTCTGGCTCCTGTATATCCTATGTGGGGACAATCTGGCAGTCAAACGGCTGGCATGCAGATTTGGAGCTCTCCTGGTTATCCCTTGTGGCAGCCTACTGCTGAAAATTGGCACTGGAAACCATTTCCAAGGATGCATGCAGATGCATGGGGCTGTCCAGTGTTACCAGTACCACCTCCTCAAGCTCCTTTTCCCCACTCTCAGAATATGCCTGCGTTGCTCAATGCTGATGCTGCAGATCACACGTTTACCATGCCACAAAGTTCCTTGGAGCATTATCCGGCAGAGGAGGTTGTTGACAGGGTTGTGACAGAGGCAGTAAGCAAACCATGGCTACCCTTGCCTTTGGGCCTGAAACCTCCTTCCACAGATAGTGTGTTGGCTGAGTTATCAAGGCAAGGCATTTCCAGCATCCCTCCTAGGGGCAGCTAG 1824 0.4359 MELNKHFLLSQAVSLMIREHDSFDLNLVSGLTFRSDATVLHFLLAIWDLNDAKPAMVFTANDLQEWKDFPKGLKVLLLEGDSISAAEIRAKLEAMDYNVSTFCDENEALSAISSGPESFHIAIVEVSSSSSQGGFKFLENAKDLPTIMTSNNHCLNTMMKCIALGAVEFLSKPLSEDKLRNIWQHVVHKAFSSGTSILCESLKPVKESVVSMLQLQKDNEQHQSSVSINIEKVSRFTDNDHVLSPRNDKYPAPSTPQLMHGTRLLDDGDCQEQTNCSTEKESGEHDEESKSVETTCGNLNAETESTPQERKSEITLARKEVDLVDASKGENVASLHTQKRKVVSNTDKNTKSPNKVGVRSDSCETRPSRKKMKVDWTPELHKKFVKAVEQLSIDQAIPSRILELMKVEGLTRHNVASHLQKYRMHKRQIFPKEEDRKWLNQRERSYCLQRPIMAFPPYHSNHTLPLAPVYPMWGQSGSQTAGMQIWSSPGYPLWQPTAENWHWKPFPRMHADAWGCPVLPVPPPQAPFPHSQNMPALLNADAADHTFTMPQSSLEHYPAEEVVDRVVTEAVSKPWLPLPLGLKPPSTDSVLAELSRQGISSIPPRGS 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00869 607 ProSiteProfiles Response regulatory domain profile. 74 187 IPR001789 GO:0000160
Phco8g00869 607 MobiDBLite consensus disorder prediction 347 361 - -
Phco8g00869 607 Pfam Myb-like DNA-binding domain 374 423 IPR001005 -
Phco8g00869 607 Pfam Response regulator receiver domain 75 182 IPR001789 GO:0000160
Phco8g00869 607 PANTHER TRANSCRIPTION ACTIVATOR GLK1 56 605 IPR044825 GO:0003700|GO:0045893
Phco8g00869 607 MobiDBLite consensus disorder prediction 339 370 - -
Phco8g00869 607 Gene3D - 368 429 - -
Phco8g00869 607 MobiDBLite consensus disorder prediction 278 292 - -
Phco8g00869 607 SUPERFAMILY CheY-like 71 190 IPR011006 -
Phco8g00869 607 Gene3D - 73 194 - -
Phco8g00869 607 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 368 427 IPR017930 -
Phco8g00869 607 SMART REC_2 73 183 IPR001789 GO:0000160
Phco8g00869 607 NCBIfam myb-like DNA-binding domain, SHAQKYF class 371 426 IPR006447 GO:0003677
Phco8g00869 607 MobiDBLite consensus disorder prediction 240 311 - -
Phco8g00869 607 FunFam Two-component response regulator 367 429 - -
Phco8g00869 607 FunFam Two-component response regulator-like APRR2 72 198 - -
Phco8g00869 607 SUPERFAMILY Homeodomain-like 369 428 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00869 Phco-Chr8 8852472 8857926 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Phco8g00869 Response_reg 3.6e-07 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01268 4 10763113 10767753 Phco8g00869 8 8852472 8857926 PCT