Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00848 ATGAAGTGTTTCTTCTTCAAAGACAAGTGTAAATCCGCACCCGAATTGCATAAGAAGAAAAACCCCGCCGTGAACCGCGCCGCCAACTCCACCGGCTCCCTATCTTCGCCCAAGAGCGTGAAGGACTTGTACAGAGAGAAAGAGAACAGCTTCAGAGTTTTCACTTTGCAAGAGCTCAGAGATGCCACCCAAGGTTTCAACAGGACGCTCAAACTTGGAGAAGGGGGGTTCGGGAGTGTGTATAAAGGATCCATCAGACCCTCCGATGGACAGGGTGATCCATTTCCAGTAGCAATCAAAAGGCTCAACACGCGTGGCTTCCAGGGTCATAAAGAATGGCTTGCTGAAGTTCAATTTCTTGGCATTGTTAATCACCCAAATTTGGTTAAGCTTTTGGGGTACTGCTCCGTGGACGGAGAAAGAGGAATCCAACGGCTGTTGGTGTACGAGTTCATGCCCAACAGGAGCTTGGAGGATCACCTATTCAATAAAAGTTTACCACCCCTGCCTTGGAAAACAAGATTGGAGATTATGCTTGGTGCTGCTCAAGGATTAGCTTATCTCCATCAAGGACTGGAAATTCAGGTGATCTACCGAGATTTCAAATCTTCAAATGTTCTATTGGATGCGGACTTCCATCCAAAGCTCTCGGATTTTGGTCTTGCTAGAGAAGGACCACAAGGTGATCAGACTCATGTATCCACTGCGGTGGTTGGGACACAAGGGTATGCTGCACCAGAGTACATTGAAACGGGTCATCTGAAAGTTCAGAGTGACATGTATAGTTTTGGTGTAGTGCTGTATGAGATCCTCACAGGAAGAAGATCACTGGAAAGAAACCGTCCCTCAGCAGAACAAAAGCTTCTAGATTGGGTCAAACAGTACCCTGCTGACACCAGCAGGTTCGCGGTGATAATGGATCCACGTCTCAGGAACCAGTATTCTCCCCAAGGAGCTCGCAAAATAGCCAAGTTGGCGGATAGCTGCTTGAAGAAGAATCCAGAAGATAGACCATCCATGAGTCAGATAGTGGAAGCCTTGAAGCAAGAATTGCAACATTCAGAAACTCCAAACTCTTCTCAAGACATTGCTGAATCCTCCTCATCCCGGTCTAAATTGGTCCGAAAAAGTAAATAG 1137 0.4679 MKCFFFKDKCKSAPELHKKKNPAVNRAANSTGSLSSPKSVKDLYREKENSFRVFTLQELRDATQGFNRTLKLGEGGFGSVYKGSIRPSDGQGDPFPVAIKRLNTRGFQGHKEWLAEVQFLGIVNHPNLVKLLGYCSVDGERGIQRLLVYEFMPNRSLEDHLFNKSLPPLPWKTRLEIMLGAAQGLAYLHQGLEIQVIYRDFKSSNVLLDADFHPKLSDFGLAREGPQGDQTHVSTAVVGTQGYAAPEYIETGHLKVQSDMYSFGVVLYEILTGRRSLERNRPSAEQKLLDWVKQYPADTSRFAVIMDPRLRNQYSPQGARKIAKLADSCLKKNPEDRPSMSQIVEALKQELQHSETPNSSQDIAESSSSRSKLVRKSK 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00848 378 SUPERFAMILY Protein kinase-like (PK-like) 48 347 IPR011009 -
Phco8g00848 378 PANTHER OS01G0588500 PROTEIN-RELATED 36 352 - -
Phco8g00848 378 MobiDBLite consensus disorder prediction 350 370 - -
Phco8g00848 378 Pfam Protein tyrosine and serine/threonine kinase 70 347 IPR001245 GO:0004672|GO:0006468
Phco8g00848 378 Gene3D Transferase(Phosphotransferase) domain 1 152 373 - -
Phco8g00848 378 ProSitePatterns Protein kinases ATP-binding region signature. 72 100 IPR017441 GO:0005524
Phco8g00848 378 Gene3D Phosphorylase Kinase; domain 1 46 151 - -
Phco8g00848 378 ProSiteProfiles Protein kinase domain profile. 66 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g00848 378 MobiDBLite consensus disorder prediction 350 378 - -
Phco8g00848 378 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Phco8g00848 378 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 152 361 - -
Phco8g00848 378 CDD STKc_IRAK 72 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00848 Phco-Chr8 8619714 8622022 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Phco8g00848 PK_Tyr_Ser-Thr 3.3e-47 CL0016