Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00825 ATGGGCAAGCAAGGGCCTTGCTATCACTGTGGAGTTACAAGCACACCACTTTGGCGTAATGGGCCACCTGAGAAGCCTGTACTATGCAATGCTTGTGGATCTCGATGGAGGACCAAAGGAACACTTGCAAATTATACCCCTTTGCATGCACGGGCAGAAAATGTTGATTATGAGGACCAAAAGGTTTCCAGGGTAAAAAGCATATCATTAAATAAGAACAAAGAAGTGAAATTGGTCAAGCGAAAGCAGAATTATGATATTGCTGCATCTGGAGGGTTCATTCCAGATTTTAATCAAGGACACCGAAAGGTTGTGGATGAAGATACAAGCAATAGATCAAGCTCAGGGTCAGCTGTCTCTAACTCGGAGAGCTGTGCTCAATTTGGTGGCACAGATGCTAGTGATTTGACAGGCCCTGCTCAGTCAGTTGTCTGGGATGCCATGGTGCCTTCTAAAAAGAGGACATGTTCAGGTCGTCCAAAGCCTTCATCTGTTGAGAAGCTCACAAGAGACCTGTGTACTATTCTTCATGAACAACAGTCTTATTTCTCTGCATCTTCTGAAGAGGATCTTCTTTTTGAAAGTGACACACCAATGGTCTCTGTTGAGATAGGACACGGAAGCATTCTCATCAGGCATCCTAGCTCTATAGCTCGTGATGAAGAGTCTGAGGCTAGCTCTCTTTCAGTTGATAATAAACAATGCCTGATGAATGAAGCATATTCATTCTCTAGTACGATTCCTTTGTATAGTAGTGATCACAGTGGCATGAACTTCTCATCTCATGGAGTTGAAAAGATCAAAAGCTCTGCTGGCCAAATCATGCAACAAGAGAAACTTGAAAGGGACAAGTCTCAGCTTGAAAAACTACAAGTTCCTGGAAATCACAATTCACTGTTGTGCTCAATAGATTTAAATGATGTAGTGAATTATGAGGAGTTTATGAGGAACTTGACAAATGAAGAGCTGCAGCAATTACTGAAGTATCTCCCTGTGGTTGATACCGCTAAATTTACTGATAGCCTTAAAAACATGTTCAGTAGCTTCCAATTCAAGGAGAACTTGATTTATTTTCAGCAACTTCTCGGGGAAGGTGTCTTTGACATCTCTTTGTTGGGGACAAAACCTGAAGAATGGAAGACATTGAAAAGGCTTGTGTTATCTAATATGTCAAAGTCAAAATGGGTTGAACAGTATAATTTTCTCAAGAAATGTGAAAAAAAAGCTGGAAAAACTATTGGTCTGGGATCTACTGCTATGGAATCAAGTAATGTTACAAATGGCAAGAGAATGCGTGACCATGACAGCCAAAATCAAAATTTTCCAGAATTGAAGACAACAATGAGGAGCCCCAAAAGGGTAATCATAAAGCCTATCTGTGAAGGCAAAGAAATTGTAGAAGAAGGCTCAAGCTTCAGCCCAAAAAGCCTATTTGCTTTACCCCATGGTGTTGGTGACTTGCACGTGCTGGATTCTTTTAACTATGTTGGTGAGAGTTCTGAGGATCTGCTGTTAGATGTGCCTTCTAACAGTTCTTTTCCGCAGGCAGAGCTCCTGCTCCCAACTTTAAGCTATGGGGCTAAGGTCTGCACCACTAGTAGCTCAATACACTCAACTGTTACGCATCCTTAA 1632 0.4161 MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAENVDYEDQKVSRVKSISLNKNKEVKLVKRKQNYDIAASGGFIPDFNQGHRKVVDEDTSNRSSSGSAVSNSESCAQFGGTDASDLTGPAQSVVWDAMVPSKKRTCSGRPKPSSVEKLTRDLCTILHEQQSYFSASSEEDLLFESDTPMVSVEIGHGSILIRHPSSIARDEESEASSLSVDNKQCLMNEAYSFSSTIPLYSSDHSGMNFSSHGVEKIKSSAGQIMQQEKLERDKSQLEKLQVPGNHNSLLCSIDLNDVVNYEEFMRNLTNEELQQLLKYLPVVDTAKFTDSLKNMFSSFQFKENLIYFQQLLGEGVFDISLLGTKPEEWKTLKRLVLSNMSKSKWVEQYNFLKKCEKKAGKTIGLGSTAMESSNVTNGKRMRDHDSQNQNFPELKTTMRSPKRVIIKPICEGKEIVEEGSSFSPKSLFALPHGVGDLHVLDSFNYVGESSEDLLLDVPSNSSFPQAELLLPTLSYGAKVCTTSSSIHSTVTHP 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00825 543 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Phco8g00825 543 MobiDBLite consensus disorder prediction 420 442 - -
Phco8g00825 543 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 296 407 IPR044867 -
Phco8g00825 543 SMART GATA_3 1 53 IPR000679 GO:0006355|GO:0043565
Phco8g00825 543 MobiDBLite consensus disorder prediction 110 132 - -
Phco8g00825 543 Gene3D - 284 391 IPR038108 -
Phco8g00825 543 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 46 - -
Phco8g00825 543 Gene3D - 3 84 IPR013088 GO:0006355|GO:0008270
Phco8g00825 543 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Phco8g00825 543 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Phco8g00825 543 CDD ZnF_GATA 6 55 IPR000679 GO:0006355|GO:0043565
Phco8g00825 543 PANTHER OSJNBB0038F03.10 PROTEIN 1 522 IPR044589 -
Phco8g00825 543 MobiDBLite consensus disorder prediction 105 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00825 Phco-Chr8 8384836 8390098 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Phco8g00825 GATA 5.8e-14 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01305 4 11178510 11184190 Phco8g00825 8 8384836 8390098 PCT