Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00816 ATGTCATCATGCTCTCCAACAGAGTTAGAGACTAAAATGTCACAATCAAGTACGGATTTGATTGCAAGAGGTGGACAGGATGGTGGAAATACAATATCATACTCTCAAAGAGCAATGGAAGTTGAAACTGTGGACATTGCTGTGAATTTGAATGCAAGTCATGGACAGGATGGTGGACAAGGTGAAATCACAACATTAGGCACTCCAAGTGCAATGGAAACTAGAATCACTGTCTCAAATGAGGAATTCACTGCTGGAAACACAACATTAAGCACTCCAAGAGCAATGGACACTGTGAATGTTGAGTCAAGTGAAGGCTTGAGTGCAAGACATGGACAGGGTTGTGGACAAGATGAAACCATAAGATTAGGCACTGCAAGAGAAATGGAGACCCAAATGATAGTCTCAAGTGAGGATTTGACTGTTGGAAAGACCTCACTAAGCACTCCAAGAGCAATAGAGATTGTAAGGATTGACTCAAGTGGGGACATGGTTGCTGGAAAGACAACATCATGCACCACTCCAAGAGCAATGGAGATGGAATTGGTGGATGCAGGTGGAGATTCAATTGCAGAACAAAAGCAGGATCACGGACAAGGCAACAAGACAAAATTCAGCATTTCAAGGGAAATAGAGACAGAAACAGTGGTCTTTAGGGCTGATTTGATGGCAACGCCTAAACAAATCTTTGGAAAAGGTGGAACATCAGGCACTCCAAAAGCAGTGAAGAATAAAATGGCAGAGACAAGCATGGAGCCAATTGCTAGATGCAAAAGGGTTTGTGGGCGAGGTGTAAGAGAAAAAGGTCCATCATCACCTGAAGGAAAAGCAACATACAAGAAAAGAGATTCACCTTTTCCTGAAAGAGCAAGGTCAGCTAAACGAGGTGCAAGAAGAGGCAGGCAGGGTACTTGGAACCATCCTACTCAGAAGAGGGCAAGAATAATAGAAAAAAATAAGGAAATTTGTGATCCTGGACCAAGCTCAATAATGGAAGAAGGTCCGTCATCACCTGAAAGACGAGCAGCAAACAACAAAAGAGGTTCACCTTTGCTTGAAAGAGTTAGGTCATGTAAACGAGGCACAAAAAGGGGCATGCAGGGTACATCAAGCCAACCTAGTCAGAAAAGGGTAAGAATAGTAGAACAGAACAAAGAAGTTAGTAATCCTGGACCAAACTCAATAATGGAAAATGGTCCATCATCACTTGAAAGACAAGCAGCAAACAACAAAAGAGGTTCACCTTCATCTGAAAGAGTAAGGTCATGTAAGAAAAACACTTGTATTTTATGGTTGATAGACTCTAGGATTATTAAGAAAGATGAACGAGTCAGCTATAAGAGTGCCACAATGAAAAAAGCATTAGCAGGAAGGATTACTAGGGGTGGAATTCTCTGCAGCTGTTGCCAGGAGGAGATATCAATGTGGACCTTTGAGAAGCATGCTGGAAGTGATCTTAGACAGCCCTATAAACATATTTACATTCACAGAAAACAGAAATCCCTCCGAAAATGCCTGATTGAAGCTTGGCAACATGCCCGGGAACAAAAGCGTCGGCACATGTTTTTGTATGTGCCGAAAGAAACTGATGCAGACCAAAATGATGATGTTTGTGCAGTCTGTGGCGATGGAGGAGACTTAATCTGTTGTGACAAGTGTCCTTCCACATATCATCTATCTTGCATGAATATAGAGACGGTTCCCCAAAATGATTGGTTTTGTCCATATTGTGTATGCAAACACTGTGGGCTGGTTGTGAACCTGGTTGTTGAGAAAAAAGAATACTACGAGAAAAAAGAAGGCCTCAAGTGCTCTCAATGTGACAAGAAGTATCATTGGGAGTGCTTTGAAAAATCTGAAAAAGAATCCTCAAGACAAACTCCGGACTTTAACCCTTCAAGATCATATTGTGGGCGAGGTTGCCAATTGATATATGAGAAAATGGGGGCATATCTCGGAATTAGAAATGATTATTCGGCAAAATACTCTTGGAGGGTTATCCGCGTAATGGAGACATACAAGAAGAATTCTGCAGATATGAATCTATTCTTAGAAAACAATTCAAGGGTTGCGGTTTCTTGGATGTTAATGAATGAAGCTTTTAAGACAATAACTGACAGGAAAACGGGCATCAATGTGGTTCGAAGCATAGTTTACAGCTGCAAGTCAAACTTAACCAGGATTGATTTTAGCCGTTTTTTTATGTTTGTTCTGGAGGAAGATGATGCGATCATTGCTGCAGCTTCTATAAGATTTCACGGGACAAGGATTGCAGAAATGCCATTTATTGTAACAGAAAGGGCACACAGGGGCCAAGGAGTTTGCCAGGAATTAATGAGGGTGATTGAATCGTTCCTATGCAATCTTAAAGTCGAAAAGTTGATAATTCCATCTGCTGTGGAGACTTATAATATGTGGAAGCGCAAGTACAACTTTACTGAGGTGAGTGAAGAGCTAAAGAAAGAAATATCCTCCTATAAAATTGTGATGTTCCCTTGTGCTGTAAGACTGTACAAGGACTTGTCAGCAAGTATAGCAGACATTAAGAATGATCTGGAACCACAAACAGAGCATGCAGAGGTTACTACTAGACTTGAACATGGATCCTCACCAGGAAGATTAGAAGAAGTAAAAGAGTTATTCAAAGTCTACTTGACTGGATCAACTGGGGCCATTGAATTTTGCACCCCCATATCCAGAATACAATGCTCATCCATTGGTCTGACCTAG 2730 0.4128 MSSCSPTELETKMSQSSTDLIARGGQDGGNTISYSQRAMEVETVDIAVNLNASHGQDGGQGEITTLGTPSAMETRITVSNEEFTAGNTTLSTPRAMDTVNVESSEGLSARHGQGCGQDETIRLGTAREMETQMIVSSEDLTVGKTSLSTPRAIEIVRIDSSGDMVAGKTTSCTTPRAMEMELVDAGGDSIAEQKQDHGQGNKTKFSISREIETETVVFRADLMATPKQIFGKGGTSGTPKAVKNKMAETSMEPIARCKRVCGRGVREKGPSSPEGKATYKKRDSPFPERARSAKRGARRGRQGTWNHPTQKRARIIEKNKEICDPGPSSIMEEGPSSPERRAANNKRGSPLLERVRSCKRGTKRGMQGTSSQPSQKRVRIVEQNKEVSNPGPNSIMENGPSSLERQAANNKRGSPSSERVRSCKKNTCILWLIDSRIIKKDERVSYKSATMKKALAGRITRGGILCSCCQEEISMWTFEKHAGSDLRQPYKHIYIHRKQKSLRKCLIEAWQHAREQKRRHMFLYVPKETDADQNDDVCAVCGDGGDLICCDKCPSTYHLSCMNIETVPQNDWFCPYCVCKHCGLVVNLVVEKKEYYEKKEGLKCSQCDKKYHWECFEKSEKESSRQTPDFNPSRSYCGRGCQLIYEKMGAYLGIRNDYSAKYSWRVIRVMETYKKNSADMNLFLENNSRVAVSWMLMNEAFKTITDRKTGINVVRSIVYSCKSNLTRIDFSRFFMFVLEEDDAIIAAASIRFHGTRIAEMPFIVTERAHRGQGVCQELMRVIESFLCNLKVEKLIIPSAVETYNMWKRKYNFTEVSEELKKEISSYKIVMFPCAVRLYKDLSASIADIKNDLEPQTEHAEVTTRLEHGSSPGRLEEVKELFKVYLTGSTGAIEFCTPISRIQCSSIGLT 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00816 909 MobiDBLite consensus disorder prediction 386 419 - -
Phco8g00816 909 SUPERFAMILY FYVE/PHD zinc finger 526 583 IPR011011 -
Phco8g00816 909 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 525 601 IPR013083 -
Phco8g00816 909 ProSiteProfiles Zinc finger PHD-type profile. 535 580 IPR019787 -
Phco8g00816 909 Gene3D - 714 830 - -
Phco8g00816 909 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 695 842 IPR000182 GO:0016747
Phco8g00816 909 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 729 817 IPR016181 -
Phco8g00816 909 Pfam PHD-finger 537 579 IPR019787 -
Phco8g00816 909 MobiDBLite consensus disorder prediction 1 31 - -
Phco8g00816 909 Pfam Tify domain binding domain 457 509 IPR032308 -
Phco8g00816 909 CDD PHD2_CHD_II 537 577 - -
Phco8g00816 909 PANTHER PHD FINGER PROTEIN 12 320 854 IPR042163 GO:0003714|GO:0045892
Phco8g00816 909 MobiDBLite consensus disorder prediction 363 378 - -
Phco8g00816 909 MobiDBLite consensus disorder prediction 261 293 - -
Phco8g00816 909 SMART PHD_3 579 642 IPR001965 -
Phco8g00816 909 SMART PHD_3 537 578 IPR001965 -
Phco8g00816 909 CDD NAT_SF 735 796 - -
Phco8g00816 909 MobiDBLite consensus disorder prediction 261 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00816 Phco-Chr8 8267852 8272879 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Phco8g00816 TDBD 7.9e-16 No_clan