Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00806 ATGTTGGTTCATGTGAGTGTGAGTTGGGGGCAGAGTGACAGGGCACAGGGTGTGAAAGAAGAAGAAAAGGAAAAGTTAGGGAAAGCGACGTTGTTGGCTGGGGGGAAGACCCTCGTGGTGATCGCATGGGTGGAGATTTGTGTGTCGCGTAGGATAAGGGATAATAGGGACCCACCGAGGGACAACCCAAATATAATGAAAAGCAACTCATTCACTCCTGGCCCAAATCTTCAGCAGTCAATGGAATTAGTTTCGGTGTTGTGGAGTGGGACTTATCCAATGCCGCTAAATTTTATAAAGCTAGAGATGATGGTTCAAAAGGAAGATTTGGGTTTGAGTCTAAGCCTCAACTTCCGTCACAATATCCCAAATCCTCAACATCTTACACTCATCTCCTCCTCAACTCATTCATCTTCCCCTTCTGCTTCAAATCCTTTTAAACCCTCTTGGAACGACCCTTTCGCCTCTTCTGATCGAAACTCGGACACATGCAGAGGCGAAACCCGATCTTTCCTCCGCGGAATCGACGTGAATCGGTTACCTTCGGCCGTGGACATGGAAGAGGAAGCGGGAGTTTCGTCTCCGAACAGCACCGTCTCGAGCGTGAGCGGAAAGCGAAGCGAGCGAGAACCCAACGGTGAAGAACACGACATGAACAGAGCGTGTTCCCGCGGAATCAGCGACGAAGAAGACGGGGAAACCTCCAGGAAAAAACTCAGACTCTCCAAAGACCAATCAGCTATTCTGGAAGAAAGTTTCAAAGAGCACAATACCCTCAACCCGAAGCAAAAGCTGGCACTGGCAAAACAGCTAGGCCTTCTACCAAGACAAGTTGAGGTGTGGTTCCAGAACCGGAGGGCAAGGACTAAGCTGAAGCAGACTGAGGTGGATTGCGAGGTGTTGAAAAGGTGCTGCGAGAATCTGACTGAGGAAAATAGAAGGTTGCAGAAGGAAGTTCAGGAGCTTAGAGCACTCAAACTTTCCCCTCAGTTTTACATGCAAATGACCCCACCCACCACACTCACTATGTGCCCATCTTGCGAGCGGGTGGCTGTTCCGTCCTCCGCCGTTGATGCCGCCACACGTCATCATCCCATGGCCCAGACCCAGGCCCACAGTCGGCCCATGCCCATTGGGCCATGGGCTTCCGCTGCTCCCATTCCGCACCGGGGCTTTGATGGTTTCCACCACTGA 1194 0.5134 MLVHVSVSWGQSDRAQGVKEEEKEKLGKATLLAGGKTLVVIAWVEICVSRRIRDNRDPPRDNPNIMKSNSFTPGPNLQQSMELVSVLWSGTYPMPLNFIKLEMMVQKEDLGLSLSLNFRHNIPNPQHLTLISSSTHSSSPSASNPFKPSWNDPFASSDRNSDTCRGETRSFLRGIDVNRLPSAVDMEEEAGVSSPNSTVSSVSGKRSEREPNGEEHDMNRACSRGISDEEDGETSRKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKQLGLLPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCERVAVPSSAVDAATRHHPMAQTQAHSRPMPIGPWASAAPIPHRGFDGFHH 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00806 397 CDD bZIP 285 324 - -
Phco8g00806 397 MobiDBLite consensus disorder prediction 129 167 - -
Phco8g00806 397 ProSiteProfiles 'Homeobox' domain profile. 232 292 IPR001356 GO:0003677
Phco8g00806 397 MobiDBLite consensus disorder prediction 1 22 - -
Phco8g00806 397 MobiDBLite consensus disorder prediction 53 76 - -
Phco8g00806 397 Coils Coil 291 328 - -
Phco8g00806 397 CDD homeodomain 236 293 IPR001356 GO:0003677
Phco8g00806 397 PRINTS Lambda-repressor HTH signature 272 288 IPR000047 GO:0003677
Phco8g00806 397 PRINTS Lambda-repressor HTH signature 263 272 IPR000047 GO:0003677
Phco8g00806 397 MobiDBLite consensus disorder prediction 62 76 - -
Phco8g00806 397 SMART halz 292 335 IPR003106 GO:0006355|GO:0043565
Phco8g00806 397 SMART HOX_1 234 296 IPR001356 GO:0003677
Phco8g00806 397 MobiDBLite consensus disorder prediction 191 206 - -
Phco8g00806 397 ProSitePatterns 'Homeobox' domain signature. 267 290 IPR017970 GO:0000981|GO:0006355
Phco8g00806 397 Pfam HD-ZIP protein N terminus 104 210 IPR006712 GO:0005634
Phco8g00806 397 MobiDBLite consensus disorder prediction 207 240 - -
Phco8g00806 397 Pfam Homeobox associated leucine zipper 292 326 IPR003106 GO:0006355|GO:0043565
Phco8g00806 397 Pfam Homeodomain 236 290 IPR001356 GO:0003677
Phco8g00806 397 Gene3D - 240 290 - -
Phco8g00806 397 MobiDBLite consensus disorder prediction 184 240 - -
Phco8g00806 397 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 143 370 - -
Phco8g00806 397 FunFam Homeobox-leucine zipper protein 18 223 297 - -
Phco8g00806 397 MobiDBLite consensus disorder prediction 129 161 - -
Phco8g00806 397 SUPERFAMILY Homeodomain-like 224 293 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00806 Phco-Chr8 8142766 8145687 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Phco8g00806 HD-ZIP_N 2.2e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01329 4 11389514 11390845 Phco8g00806 8 8142766 8145687 PCT