Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00798 ATGAATGAGATTCCACTTTCCATTCTCAAACGAATAACCGTAACTGGTGGTTGGAGCTTCCCATTTTCTCTCACCTATCTGATCCTACACGAAGGCACCCCGTATAAAGACCCTGTATTCATTTATGCCCTCAACAACACAAAAACCTTATCTATTCTCATGGCACCAAGGATCAGTGATGGAACACCCAAGAGATCACCAATGAACAGAGGTGCATGGACCCCAGAGGAAGACCGAAGGCTAGCCCACTGCATTGAAATTCATGGTGCAAAGAGGTGGAAGACTGTGGCACTTAAATCAGGTTTGAATAGATGTGGGAAGAGTTGCAGGCTGAGATGGTTAAACTATCTGAGACCTAATATCAAGAGGGGAAACATATCAGATGAAGAAGAAGATTTGATTCTTAGGCTTCACAGACTCTTGGGAAACAGGTGGTCTTTGATAGCTGGTAGGCTTCCAGGACGAACAGACAATGAAATTAAAAATTATTGGAACTCTCATTTGTGCAAAAAAGTGAATCAGAAAGAGGAGAGACCAGAATCTTCAACAACACAGGAAATTATTGCCCAGAATCAGAATGCTGGGGACAACCATGCAATATCGGAGAATGGGATTGCAACCAACGAAAGTGGTAACTTAGATGTTACATTCGACGTTGACGAATTTTTCAACTTCTCTGAGGAATCCTGTGGGTTAGATTGGCTGAACAAGTACTTGGGAACTTGA 726 0.4256 MNEIPLSILKRITVTGGWSFPFSLTYLILHEGTPYKDPVFIYALNNTKTLSILMAPRISDGTPKRSPMNRGAWTPEEDRRLAHCIEIHGAKRWKTVALKSGLNRCGKSCRLRWLNYLRPNIKRGNISDEEEDLILRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNSHLCKKVNQKEERPESSTTQEIIAQNQNAGDNHAISENGIATNESGNLDVTFDVDEFFNFSEESCGLDWLNKYLGT 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00798 241 CDD SANT 72 117 IPR001005 -
Phco8g00798 241 CDD SANT 127 168 IPR001005 -
Phco8g00798 241 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 118 172 IPR017930 -
Phco8g00798 241 ProSiteProfiles Myb-like domain profile. 65 117 IPR001005 -
Phco8g00798 241 Gene3D - 126 196 - -
Phco8g00798 241 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 117 IPR017930 -
Phco8g00798 241 FunFam transcription repressor MYB5-like 127 194 - -
Phco8g00798 241 ProSiteProfiles Myb-like domain profile. 118 168 IPR001005 -
Phco8g00798 241 SMART sant 122 170 IPR001005 -
Phco8g00798 241 SMART sant 69 119 IPR001005 -
Phco8g00798 241 FunFam MYB-related transcription factor 69 122 - -
Phco8g00798 241 SUPERFAMILY Homeodomain-like 68 164 IPR009057 -
Phco8g00798 241 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 66 193 - -
Phco8g00798 241 Gene3D - 70 122 - -
Phco8g00798 241 Pfam Myb-like DNA-binding domain 123 168 IPR001005 -
Phco8g00798 241 Pfam Myb-like DNA-binding domain 70 117 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00798 Phco-Chr8 7978644 7980114 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco8g00798 Myb_DNA-binding 5.3e-17 CL0123