Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00781 ATGGATAATAGACACAAATGCAAGCTTTGTTCAAGGTCTTTCACCAATGGCAGAGCCCTTGGGGGTCACATGAAGGCTCATCTCGCTACTCTCCCTCTTCCTCCAAAGCCTCAAACTTTAACCCACTCTTCCTTCACTTATTCCTCTTCCTCAGACTCTGAGCAAGAACAACTCAAAGAACAAGATTCTCTTAGTTACGCGCTCAGGGAGAATCCTAAGAAGAGCTTCAGAGTAACGGATCCTGAAGACAGAGAGAGCGAGACCGAGTCAAAGAACCCAACTCGCCAGCGATCCAAGCGGAACCGGAAATCGGCCATGCTGAAGCTCAGCTTCGTGGTGTCCACACCTCTCATCACCGAACCCGAACCTGTGAGTTCAGTCTCCGACACCTCCCCGGAGGAAGACGTAGCCATGAGCCTCATGATGCTCTCCCGCGACACGTGGAACGTAGTCCCCAATGCAGGTCCACCGCAGGGATCAAAGAGGCACTGCACGGGATCAGAGACCAAGCTCAAGAAACTCCGCGGCAAGTACCTCTGTCACACTTGCGGCAAAGCCTTTCGATCCTCTCGGGCCTTGGGGAGTCACAGAACCATTTGTTGCCGTCAAGAGGAAGTTCAAAATCAAAACAACAACAACAATAGTATTAAGGTTTTTGAATGTCCCTTTTGTTACAAGGTGTTCGGCTCTGGTCAAGCTCTGGGCGGACACAAGAGATCTCATCTAATCCCTTCGTCATCTTCAACAGTTAACGATTCCCTTAAATTCAAACAGACCTTCATAGATCTCAACATGCCGGCGCCGCCAGAAGAGGACGACCTCAGTGTTGTCTCTGATGCCTAA 843 0.5018 MDNRHKCKLCSRSFTNGRALGGHMKAHLATLPLPPKPQTLTHSSFTYSSSSDSEQEQLKEQDSLSYALRENPKKSFRVTDPEDRESETESKNPTRQRSKRNRKSAMLKLSFVVSTPLITEPEPVSSVSDTSPEEDVAMSLMMLSRDTWNVVPNAGPPQGSKRHCTGSETKLKKLRGKYLCHTCGKAFRSSRALGSHRTICCRQEEVQNQNNNNNSIKVFECPFCYKVFGSGQALGGHKRSHLIPSSSSTVNDSLKFKQTFIDLNMPAPPEEDDLSVVSDA 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00781 280 ProSiteProfiles Zinc finger C2H2 type domain profile. 5 32 IPR013087 -
Phco8g00781 280 SUPERFAMILY beta-beta-alpha zinc fingers 217 242 IPR036236 -
Phco8g00781 280 MobiDBLite consensus disorder prediction 36 64 - -
Phco8g00781 280 ProSitePatterns Zinc finger C2H2 type domain signature. 221 241 IPR013087 -
Phco8g00781 280 ProSiteProfiles Zinc finger C2H2 type domain profile. 178 205 IPR013087 -
Phco8g00781 280 ProSitePatterns Zinc finger C2H2 type domain signature. 7 27 IPR013087 -
Phco8g00781 280 SMART c2h2final6 219 241 IPR013087 -
Phco8g00781 280 SMART c2h2final6 178 198 IPR013087 -
Phco8g00781 280 SMART c2h2final6 5 27 IPR013087 -
Phco8g00781 280 Pfam C2H2-type zinc finger 218 242 - -
Phco8g00781 280 Pfam C2H2-type zinc finger 178 197 - -
Phco8g00781 280 Pfam C2H2-type zinc finger 4 29 - -
Phco8g00781 280 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 280 IPR044303 GO:0006355
Phco8g00781 280 MobiDBLite consensus disorder prediction 31 106 - -
Phco8g00781 280 SUPERFAMILY beta-beta-alpha zinc fingers 4 198 IPR036236 -
Phco8g00781 280 Gene3D Classic Zinc Finger 175 241 - -
Phco8g00781 280 ProSiteProfiles Zinc finger C2H2 type domain profile. 219 241 IPR013087 -
Phco8g00781 280 MobiDBLite consensus disorder prediction 73 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00781 Phco-Chr8 7819734 7820576 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco8g00781 zf-C2H2_6 3.3e-11 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01357 4 11626905 11627783 Phco8g00781 8 7819734 7820576 PCT