Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00742 ATGTCATCCTCTTCCACCACAATATCACTGGACCACCTCCCTCCTTCCGAACAGCTTTGTTATGTTCACTGCAATATTTGTGACACCGTTCTCGCTGTAAGTGTTCCGTGCACAAGCTTGTTCAAGACAGTTACTGTCCGATGCGGCCATTGCACTAACCTCCTGCCAGTGAACATGCGCGGCCTGCTTGTGCCATCTCCCACTCAATTTCATTTGGGTCACTCTTTCTTCTCCCCGTCCAATAACCTTCTGGAGGAGATACCAAACCCCTCTCCAAATTTTCTGATGAACCAAACAAATTTAAGTGCTTCAAATGAGTTCTCTATGCCTGCTAGGACCGCAGCTGATGAGCTTCCACGGCCACCGATCATAAACAGACCTCCTGAGAAGAGACAGAGAGTCCCCTCAGCGTACAACCGCTTTATCAAGGACGAGATCCAACGCATCAAGTCTGTCAATCCCGATATAACTCACAGGGAAGCCTTCAGTGCAGCTGCCAAGAATTGGGCCCACTTCCCACACATCCACTTTGGTCTCATGCCTGATCAGACTGTGAAGAAGACAAATGTGTGCCAGCAGGAAGGAGAAGAGGTTCTCATGAAAGATGGGTTTTATGCTTCAGCTAATGTTGGTGTCTCACCCTACTAA 648 0.4846 MSSSSTTISLDHLPPSEQLCYVHCNICDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNMRGLLVPSPTQFHLGHSFFSPSNNLLEEIPNPSPNFLMNQTNLSASNEFSMPARTAADELPRPPIINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPDQTVKKTNVCQQEGEEVLMKDGFYASANVGVSPY 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00742 215 Gene3D High mobility group box domain 124 187 IPR036910 -
Phco8g00742 215 SUPERFAMILY HMG-box 123 172 IPR036910 -
Phco8g00742 215 CDD HMG-box_SF 133 169 - -
Phco8g00742 215 FunFam Axial regulator YABBY 124 195 - -
Phco8g00742 215 Pfam YABBY protein 15 179 IPR006780 GO:0007275
Phco8g00742 215 PANTHER PROTEIN YABBY 6-RELATED 1 189 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00742 Phco-Chr8 7421818 7424327 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Phco8g00742 YABBY 1.7e-70 CL0114