Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00700 ATGAGTTTCCTTCATCTCCCCCTTCTGTGTTTGTTGGTTGCACTTTCCAGTTCACACCTGGTTCGTGGAAATGCAGAGCTAAGAGCTCTGATGGACCTCAAAAAATCTCTGGACCCAGAGGATACCCTCCTTGGCTCGTGGACCAGTGACGGTGATCCATGCAGTGGTTCGTTCTTGGGGGTTGCGTGCAACCAGCATAACAAAGTGGCCAATATATCATTGCCAGGAAGAGGTCTTTCTGGCCGAGTCTCTCCAGCTGTGGCTGAACTCAGATGCTTGTCAGGTCTATACCTACATTTCAACCGTCTCTCTGGGGACATACCCAGAGAGATTGCAAATCTAAAAGAATTGCTGGATCTCTATCTCAATGTTAATGATCTATCTGGAACTATTCCTCCTGATATCGGGAACATGACTAGCCTCCAAGTGCTGCAGTTAGGCTATAACCAGTTAGAGGGGAAGATACCTAAGGAACTGGGTTCATTGAAGCAGCTTAATGATATGTCTTTGCAACATAACAAATTAACTGGTCAGATTCCTCTAACCTTGGGTAGCTTGGAGAAGCTAAAGATGCTATATTTGAGCTCTAACAACTTCAATGGCATAATCCCTGCAACACTAGCTGATATTGCAAACTTGGAAGTTCTAGATATTCAAAACAATTCTCTTTCAGGGACTGTTCCTTCTGCATTGAAAAGATTAGGGGAAGGATTCAAAGGTGCAAACAACCCAGATCTCTGCGCAGTTGGGTTTTCTACTTTGAAAGCTTGCAACAGTGATAAAATATTCGGCATGGGTCAGATTAGTTTCCCAAATATATCCATAAATAATAATCCCTCAGTAACTCTCACGAATCCTGCAAATACCCACTTGCAGTGTAACCAGATCCATTGCTCAAAATCTAGAGGGTTTCTTCATCTTGTCATTGCAGCAAGTATTACAACTACCATTATTACATTCTTAAGCTCTGGAATTTTCATATTTGTCAGATACCGCCGCCAAAGGGAGAGGGTTAGGAGCACGTCAGATTGTTCTGAAAGCCAACTTAGTCCTTACCTGCCTAAAGATTTCTATAGAAGTTCATCTCCACTTGTTAATCTTGAGAATTACTATAATGGTATGGACTCACTGGATGATGGTCAAAATGCAAATGGATTATCCCTTGAATATTTGAACCGTTTTAGATTTAATATTGATGAGATTGAATCAGCAACGCAGCACCTTTCTGAGGCCAATCTATTGGGTAAGAGCAAACTCTCAGCAGTCTATAAAGGTGTTCATAGAGACGGTTCTCTTGTGGCTATTAGAAGCATTAGCGTGACTTGCTGCAAAACTGAGGAAGATGAATTTTTGAAGGGGTTGATCCTATTAACCACTCTGAGACATGAAAATATTGTTAAGATGAAAGGTTTCTGTTACTCAAGAAGCAGAGGGGAATGGTATTTTGTCTACGACTTTGCCACCAGGGGTAATCTGTCTCAGTATCTTGACAACGAAGATGGAAGTGACCCTGTACTTGAATGGTCCAAGAGGGTTTCTATCATCAGGGGTATTGCAAAAGGTATTGGTTATTTGCACAGCAACGAAGCAAGCAAGCCCACAATAGTACACCAAAACGTTTCAGTTGAAAAGGTTATTCTAGACAATCAATTTAACCCCTTGATCATGGATGCTGGCCTCCCCAAGCTTCTTGCAGATGATGTAGTTTTCTCAGCTCTTAAAGCAAGTGCTGCCATGGGATACCTGGCACCAGAATATATTACTACTGGGTGCTTTACTGAGAAGAGTGATATATACGCATTTGGGGTTATTGTCCTTCAACTTCTCTCTGGAAAGGCATTGATAGGGGGTTCAATCCGGGCGGCAGTTGAAGCTTTTAAATTTGAAGATTTTGTTGACACAAATCTGAAGGGAGATTATTCTAAATCTGAAGCTGCAATTCTTTCCAAGCTTGCAATTGTGTGCACCCATGAACTGCCAGAGCAAAGGCCAACCATGGTGGAGGTCATTCAAGAGCTGACCATGCTTTCTGTCCATTCATCATAA 2046 0.4208 MSFLHLPLLCLLVALSSSHLVRGNAELRALMDLKKSLDPEDTLLGSWTSDGDPCSGSFLGVACNQHNKVANISLPGRGLSGRVSPAVAELRCLSGLYLHFNRLSGDIPREIANLKELLDLYLNVNDLSGTIPPDIGNMTSLQVLQLGYNQLEGKIPKELGSLKQLNDMSLQHNKLTGQIPLTLGSLEKLKMLYLSSNNFNGIIPATLADIANLEVLDIQNNSLSGTVPSALKRLGEGFKGANNPDLCAVGFSTLKACNSDKIFGMGQISFPNISINNNPSVTLTNPANTHLQCNQIHCSKSRGFLHLVIAASITTTIITFLSSGIFIFVRYRRQRERVRSTSDCSESQLSPYLPKDFYRSSSPLVNLENYYNGMDSLDDGQNANGLSLEYLNRFRFNIDEIESATQHLSEANLLGKSKLSAVYKGVHRDGSLVAIRSISVTCCKTEEDEFLKGLILLTTLRHENIVKMKGFCYSRSRGEWYFVYDFATRGNLSQYLDNEDGSDPVLEWSKRVSIIRGIAKGIGYLHSNEASKPTIVHQNVSVEKVILDNQFNPLIMDAGLPKLLADDVVFSALKASAAMGYLAPEYITTGCFTEKSDIYAFGVIVLQLLSGKALIGGSIRAAVEAFKFEDFVDTNLKGDYSKSEAAILSKLAIVCTHELPEQRPTMVEVIQELTMLSVHSS 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00700 681 Gene3D Ribonuclease Inhibitor 23 172 IPR032675 -
Phco8g00700 681 FunFam Protein NSP-INTERACTING KINASE 2 23 172 - -
Phco8g00700 681 Gene3D Phosphorylase Kinase; domain 1 375 486 - -
Phco8g00700 681 Gene3D Ribonuclease Inhibitor 173 245 IPR032675 -
Phco8g00700 681 Pfam Leucine rich repeat 164 223 IPR001611 GO:0005515
Phco8g00700 681 SUPERFAMILY L domain-like 26 232 - -
Phco8g00700 681 FunFam Protein NSP-INTERACTING KINASE 2 379 486 - -
Phco8g00700 681 Pfam Leucine rich repeat N-terminal domain 24 64 IPR013210 -
Phco8g00700 681 Gene3D Transferase(Phosphotransferase) domain 1 488 679 - -
Phco8g00700 681 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 71 674 - -
Phco8g00700 681 Pfam Protein tyrosine and serine/threonine kinase 412 673 IPR001245 GO:0004672|GO:0006468
Phco8g00700 681 ProSiteProfiles Protein kinase domain profile. 408 681 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g00700 681 SUPERFAMILY Protein kinase-like (PK-like) 383 677 IPR011009 -
Phco8g00700 681 SMART LRR_typ_2 138 162 IPR003591 -
Phco8g00700 681 SMART LRR_typ_2 186 209 IPR003591 -
Phco8g00700 681 SMART LRR_typ_2 90 114 IPR003591 -
Phco8g00700 681 SMART LRR_typ_2 210 233 IPR003591 -
Phco8g00700 681 FunFam Protein NSP-INTERACTING KINASE 2 487 677 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00700 Phco-Chr8 7023622 7026617 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Phco8g00700 PK_Tyr_Ser-Thr 1.4e-33 CL0016