Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00684 ATGGTGAGGGGGAAAACTCAGATGAAGCGCATCGAAAACGAAACCAGTAGGCAAGTCACCTTCTCCAAGAGAAGGAGCGGCTTGCTTAAGAAGGCCTTTGAGCTTTCGGTGCTGTGCGATGCTGAAGTCGCTCTCATCATCTTCTCCACCAGAGGGAGGCTTTACGAGTTCTCCAGTTCAACTTCAAGTATAAACAAAACAGTTGAACGCTATCAAAGGAAAATCAAGGACCTTTGTGTCAACAACAACGGAATCCATGAAAATACACAGATTCTGAAGGACGGTGATATGAGCATGGCAAAGAGAATCGAGCAGCTAGACAATTCCAGAAGGAAGCTTTTGGGAGATGAATTGGATACATGCAGTATTGACGAGTTACGACAGGTAGAGAACCAGCTCGAACGCAGCTTGGAAAAAATTAGGGCAAGAAAGAATGAAATGTTCAAGGAGCAAATTGAGAAGTTAAAAGAAGAGTACCAGATTGAACGAGAGCGTTATTTGAGTGATGAGGATTTGGAAGTGGTCACAGAAAAGAGGAAAGAAGAGTTATTCATAGGAAGACCTGAGAAACAAAAACTTTAA 582 0.4278 MVRGKTQMKRIENETSRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSTRGRLYEFSSSTSSINKTVERYQRKIKDLCVNNNGIHENTQILKDGDMSMAKRIEQLDNSRRKLLGDELDTCSIDELRQVENQLERSLEKIRARKNEMFKEQIEKLKEEYQIERERYLSDEDLEVVTEKRKEELFIGRPEKQKL 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00684 193 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phco8g00684 193 Coils Coil 123 169 - -
Phco8g00684 193 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Phco8g00684 193 ProSiteProfiles K-box domain profile. 89 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phco8g00684 193 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Phco8g00684 193 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phco8g00684 193 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phco8g00684 193 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 157 - -
Phco8g00684 193 Pfam K-box region 93 161 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phco8g00684 193 FunFam Agamous-like MADS-box protein AGL13 13 81 - -
Phco8g00684 193 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Phco8g00684 193 CDD MADS_MEF2_like 3 72 IPR033896 GO:0000977|GO:0045944
Phco8g00684 193 SUPERFAMILY SRF-like 3 75 IPR036879 GO:0003677|GO:0046983
Phco8g00684 193 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Phco8g00684 193 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00684 Phco-Chr8 6876966 6894133 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Phco8g00684 K-box 7.6e-18 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00684 8 6876966 6894133 Phco8g00684 8 6876966 6894133 ECH